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Package 78/553HostnameOS / ArchBUILDCHECKBUILD BIN
bridge 1.20.0
Raphael Gottardo
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/bridge
Last Changed Rev: 64678 / Revision: 69725
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: bridge
Version: 1.20.0
Command: rm -rf bridge.buildbin-libdir && mkdir bridge.buildbin-libdir && E:\biocbld\bbs-2.10-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=bridge.buildbin-libdir bridge_1.20.0.tar.gz
StartedAt: 2012-09-24 03:01:05 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 03:01:22 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 16.6 seconds
RetCode: 0
Status:  OK  
PackageFile: bridge_1.20.0.zip
PackageFileSize: 592.7 KiB

Command output


install for i386

* installing *source* package 'bridge' ...
** libs
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O3 -Wall  -std=gnu99 -mtune=core2 -c bridge2.affy.c -o bridge2.affy.o
bridge2.affy.c: In function 'gene_express_2s':
bridge2.affy.c:37:7: warning: unused variable 'count_model' [-Wunused-variable]
bridge2.affy.c:36:7: warning: unused variable 'old_model' [-Wunused-variable]
bridge2.affy.c: In function 'up_date_w2':
bridge2.affy.c:302:3: warning: implicit declaration of function 'dirichlet' [-Wimplicit-function-declaration]
bridge2.affy.c:282:10: warning: unused variable 'w_new' [-Wunused-variable]
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O3 -Wall  -std=gnu99 -mtune=core2 -c bridge2.c -o bridge2.o
bridge2.c: In function 'mcmc':
bridge2.c:199:18: warning: unused variable 'width_a' [-Wunused-variable]
bridge2.c:199:10: warning: unused variable 'old_a' [-Wunused-variable]
bridge2.c:198:18: warning: unused variable 'width_b' [-Wunused-variable]
bridge2.c:198:10: warning: unused variable 'old_b' [-Wunused-variable]
bridge2.c:192:10: warning: unused variable 'sum_res2' [-Wunused-variable]
bridge2.c:191:10: warning: unused variable 'sum_res1' [-Wunused-variable]
bridge2.c:177:7: warning: unused variable 'countp' [-Wunused-variable]
bridge2.c:175:7: warning: unused variable 'countb_eps' [-Wunused-variable]
bridge2.c:174:7: warning: unused variable 'counta_eps' [-Wunused-variable]
bridge2.c:173:7: warning: unused variable 'counta' [-Wunused-variable]
bridge2.c:171:7: warning: unused variable 'countrho' [-Wunused-variable]
bridge2.c:166:22: warning: unused variable 'b_eps_new' [-Wunused-variable]
bridge2.c:166:10: warning: unused variable 'a_eps_new' [-Wunused-variable]
bridge2.c:165:17: warning: unused variable 'l_ab_new' [-Wunused-variable]
bridge2.c:165:10: warning: unused variable 'l_ab' [-Wunused-variable]
bridge2.c:164:24: warning: variable 'mean_gamma2' set but not used [-Wunused-but-set-variable]
bridge2.c:164:10: warning: variable 'mean_gamma1' set but not used [-Wunused-but-set-variable]
bridge2.c:163:26: warning: unused variable 'post_prec_eta' [-Wunused-variable]
bridge2.c:163:10: warning: unused variable 'post_mean_eta' [-Wunused-variable]
bridge2.c:162:28: warning: unused variable 'post_prec_delta' [-Wunused-variable]
bridge2.c:162:10: warning: unused variable 'post_mean_delta' [-Wunused-variable]
bridge2.c:161:28: warning: unused variable 'post_prec_alpha' [-Wunused-variable]
bridge2.c:161:10: warning: unused variable 'post_mean_alpha' [-Wunused-variable]
bridge2.c:160:27: warning: unused variable 'post_prec_beta' [-Wunused-variable]
bridge2.c:160:10: warning: unused variable 'post_mean_beta' [-Wunused-variable]
bridge2.c:159:25: warning: unused variable 'post_prec_mu' [-Wunused-variable]
bridge2.c:159:10: warning: unused variable 'post_mean_mu' [-Wunused-variable]
bridge2.c:154:19: warning: unused variable 'dens_t_new' [-Wunused-variable]
bridge2.c:154:10: warning: unused variable 'dens_t' [-Wunused-variable]
bridge2.c:150:21: warning: variable 'SSgammasd' set but not used [-Wunused-but-set-variable]
bridge2.c:150:10: warning: variable 'SSgamma' set but not used [-Wunused-but-set-variable]
bridge2.c:145:10: warning: unused variable 'pi' [-Wunused-variable]
bridge2.c:143:19: warning: unused variable 'dens_rho_new' [-Wunused-variable]
bridge2.c:143:10: warning: unused variable 'dens_rho' [-Wunused-variable]
bridge2.c:142:20: warning: unused variable 'sum_rho_new' [-Wunused-variable]
bridge2.c:142:10: warning: unused variable 'sum_rho' [-Wunused-variable]
bridge2.c:138:10: warning: unused variable 'rho_new' [-Wunused-variable]
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O3 -Wall  -std=gnu99 -mtune=core2 -c bridge2_util.c -o bridge2_util.o
bridge2_util.c: In function 'qr_solve':
bridge2_util.c:570:5: warning: implicit declaration of function 'dqrdc2_' [-Wimplicit-function-declaration]
bridge2_util.c:585:5: warning: implicit declaration of function 'dqrcf_' [-Wimplicit-function-declaration]
bridge2_util.c:549:11: warning: unused variable 'vmax' [-Wunused-variable]
bridge2_util.c: In function 'inverse':
bridge2_util.c:608:9: warning: unused variable 'j' [-Wunused-variable]
bridge2_util.c: In function 'product_mat_vec':
bridge2_util.c:655:11: warning: unused variable 'k' [-Wunused-variable]
bridge2_util.c: In function 'slice_sampling_b':
bridge2_util.c:763:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
bridge2_util.c:771:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
bridge2_util.c: In function 'slice_sampling_a':
bridge2_util.c:818:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
bridge2_util.c:826:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
bridge2_util.c: In function 'slice_sampling_rho':
bridge2_util.c:875:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
bridge2_util.c:884:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
bridge2_util.c: In function 'slice_sampling_p':
bridge2_util.c:961:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
bridge2_util.c:969:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O3 -Wall  -std=gnu99 -mtune=core2 -c bridge3.c -o bridge3.o
bridge3.c: In function 'gene_express_3s':
bridge3.c:38:7: warning: unused variable 'count_model' [-Wunused-variable]
bridge3.c:37:7: warning: unused variable 'old_model' [-Wunused-variable]
bridge3.c: In function 'all_gibbs':
bridge3.c:190:7: warning: variable 'old_model' set but not used [-Wunused-but-set-variable]
bridge3.c: In function 'gibbs_mu':
bridge3.c:332:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
bridge3.c: In function 'up_date_w':
bridge3.c:362:10: warning: unused variable 'w_new' [-Wunused-variable]
gcc -shared -s -static-libgcc -o bridge.dll tmp.def bridge2.affy.o bridge2.o bridge2_util.o bridge3.o -LE:/biocbld/BBS-2˜1.10-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/bridge.buildbin-libdir/bridge/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'bridge.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'bridge' ...
** libs
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c bridge2.affy.c -o bridge2.affy.o
bridge2.affy.c: In function 'gene_express_2s':
bridge2.affy.c:37:7: warning: unused variable 'count_model' [-Wunused-variable]
bridge2.affy.c:36:7: warning: unused variable 'old_model' [-Wunused-variable]
bridge2.affy.c: In function 'up_date_w2':
bridge2.affy.c:302:3: warning: implicit declaration of function 'dirichlet' [-Wimplicit-function-declaration]
bridge2.affy.c:282:10: warning: unused variable 'w_new' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c bridge2.c -o bridge2.o
bridge2.c: In function 'mcmc':
bridge2.c:199:18: warning: unused variable 'width_a' [-Wunused-variable]
bridge2.c:199:10: warning: unused variable 'old_a' [-Wunused-variable]
bridge2.c:198:18: warning: unused variable 'width_b' [-Wunused-variable]
bridge2.c:198:10: warning: unused variable 'old_b' [-Wunused-variable]
bridge2.c:192:10: warning: unused variable 'sum_res2' [-Wunused-variable]
bridge2.c:191:10: warning: unused variable 'sum_res1' [-Wunused-variable]
bridge2.c:177:7: warning: unused variable 'countp' [-Wunused-variable]
bridge2.c:175:7: warning: unused variable 'countb_eps' [-Wunused-variable]
bridge2.c:174:7: warning: unused variable 'counta_eps' [-Wunused-variable]
bridge2.c:173:7: warning: unused variable 'counta' [-Wunused-variable]
bridge2.c:171:7: warning: unused variable 'countrho' [-Wunused-variable]
bridge2.c:166:22: warning: unused variable 'b_eps_new' [-Wunused-variable]
bridge2.c:166:10: warning: unused variable 'a_eps_new' [-Wunused-variable]
bridge2.c:165:17: warning: unused variable 'l_ab_new' [-Wunused-variable]
bridge2.c:165:10: warning: unused variable 'l_ab' [-Wunused-variable]
bridge2.c:164:24: warning: variable 'mean_gamma2' set but not used [-Wunused-but-set-variable]
bridge2.c:164:10: warning: variable 'mean_gamma1' set but not used [-Wunused-but-set-variable]
bridge2.c:163:26: warning: unused variable 'post_prec_eta' [-Wunused-variable]
bridge2.c:163:10: warning: unused variable 'post_mean_eta' [-Wunused-variable]
bridge2.c:162:28: warning: unused variable 'post_prec_delta' [-Wunused-variable]
bridge2.c:162:10: warning: unused variable 'post_mean_delta' [-Wunused-variable]
bridge2.c:161:28: warning: unused variable 'post_prec_alpha' [-Wunused-variable]
bridge2.c:161:10: warning: unused variable 'post_mean_alpha' [-Wunused-variable]
bridge2.c:160:27: warning: unused variable 'post_prec_beta' [-Wunused-variable]
bridge2.c:160:10: warning: unused variable 'post_mean_beta' [-Wunused-variable]
bridge2.c:159:25: warning: unused variable 'post_prec_mu' [-Wunused-variable]
bridge2.c:159:10: warning: unused variable 'post_mean_mu' [-Wunused-variable]
bridge2.c:154:19: warning: unused variable 'dens_t_new' [-Wunused-variable]
bridge2.c:154:10: warning: unused variable 'dens_t' [-Wunused-variable]
bridge2.c:150:21: warning: variable 'SSgammasd' set but not used [-Wunused-but-set-variable]
bridge2.c:150:10: warning: variable 'SSgamma' set but not used [-Wunused-but-set-variable]
bridge2.c:145:10: warning: unused variable 'pi' [-Wunused-variable]
bridge2.c:143:19: warning: unused variable 'dens_rho_new' [-Wunused-variable]
bridge2.c:143:10: warning: unused variable 'dens_rho' [-Wunused-variable]
bridge2.c:142:20: warning: unused variable 'sum_rho_new' [-Wunused-variable]
bridge2.c:142:10: warning: unused variable 'sum_rho' [-Wunused-variable]
bridge2.c:138:10: warning: unused variable 'rho_new' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c bridge2_util.c -o bridge2_util.o
bridge2_util.c: In function 'qr_solve':
bridge2_util.c:570:5: warning: implicit declaration of function 'dqrdc2_' [-Wimplicit-function-declaration]
bridge2_util.c:585:5: warning: implicit declaration of function 'dqrcf_' [-Wimplicit-function-declaration]
bridge2_util.c:549:11: warning: unused variable 'vmax' [-Wunused-variable]
bridge2_util.c: In function 'inverse':
bridge2_util.c:608:9: warning: unused variable 'j' [-Wunused-variable]
bridge2_util.c: In function 'product_mat_vec':
bridge2_util.c:655:11: warning: unused variable 'k' [-Wunused-variable]
bridge2_util.c: In function 'slice_sampling_b':
bridge2_util.c:763:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
bridge2_util.c:771:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
bridge2_util.c: In function 'slice_sampling_a':
bridge2_util.c:818:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
bridge2_util.c:826:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
bridge2_util.c: In function 'slice_sampling_rho':
bridge2_util.c:875:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
bridge2_util.c:884:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
bridge2_util.c: In function 'slice_sampling_p':
bridge2_util.c:961:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
bridge2_util.c:969:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c bridge3.c -o bridge3.o
bridge3.c: In function 'gene_express_3s':
bridge3.c:38:7: warning: unused variable 'count_model' [-Wunused-variable]
bridge3.c:37:7: warning: unused variable 'old_model' [-Wunused-variable]
bridge3.c: In function 'all_gibbs':
bridge3.c:190:7: warning: variable 'old_model' set but not used [-Wunused-but-set-variable]
bridge3.c: In function 'gibbs_mu':
bridge3.c:332:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
bridge3.c: In function 'up_date_w':
bridge3.c:362:10: warning: unused variable 'w_new' [-Wunused-variable]
gcc -m64 -shared -s -static-libgcc -o bridge.dll tmp.def bridge2.affy.o bridge2.o bridge2_util.o bridge3.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2~1.10-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/bridge.buildbin-libdir/bridge/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bridge' as bridge_1.20.0.zip

* DONE (bridge)