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Package 348/553HostnameOS / ArchBUILDCHECKBUILD BIN
MinimumDistance 1.0.0
Moiz Bootwalla
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/MinimumDistance
Last Changed Rev: 65639 / Revision: 69725
Last Changed Date: 2012-05-01 12:09:09 -0700 (Tue, 01 May 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: MinimumDistance
Version: 1.0.0
Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings MinimumDistance_1.0.0.tar.gz
StartedAt: 2012-09-24 02:16:23 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 02:21:32 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 309.9 seconds
RetCode: 0
Status:  OK 
CheckDir: MinimumDistance.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/MinimumDistance.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MinimumDistance/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MinimumDistance’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘doSNOW’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘MinimumDistance’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘doRUnit.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/MinimumDistance.Rcheck/00check.log’
for details.

MinimumDistance.Rcheck/00install.out:

* installing *source* package ‘MinimumDistance’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘MinimumDistance.Rnw’ 
** testing if installed package can be loaded

* DONE (MinimumDistance)

MinimumDistance.Rcheck/MinimumDistance-Ex.timings:

nameusersystemelapsed
Pedigree-class0.0120.0000.014
Pedigree0.0520.0040.054
TrioSet-class3.6400.0323.738
TrioSet5.3610.0365.640
TrioSetList-class0.0320.0040.037
TrioSetListLD0.0480.0120.065
calculateMindist2.4920.0202.623
callDenovoSegments18.701 0.12019.722
computeBayesFactor33.898 0.07234.883
isDenovo0.0360.0080.048
lrr.segs0.0080.0000.008
mad20.3320.0080.352
narrow3.0960.0003.121
phenoData0.1080.0040.111
segment2000
stackRangedDataList0.5080.0000.535
trioSetList2.1040.0042.159
trioSetListExample0.1560.0040.168
xypanelMD1.2480.0001.289