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Package 337/553HostnameOS / ArchBUILDCHECKBUILD BIN
MergeMaid 2.28.0
Xiaogang Zhong
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/MergeMaid
Last Changed Rev: 64678 / Revision: 69725
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: MergeMaid
Version: 2.28.0
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch MergeMaid_2.28.0.tar.gz
StartedAt: 2012-09-24 00:52:25 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 00:54:22 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 117.4 seconds
RetCode: 0
Status:  OK 
CheckDir: MergeMaid.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.10-bioc/meat/MergeMaid.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'MergeMaid/DESCRIPTION' ... OK
* this is package 'MergeMaid' version '2.28.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'MergeMaid' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.plot.mergeExpressionSet: warning in signif(score, digit = 3): partial
  argument match of 'digit' to 'digits'
.fdr.mergeCor: no visible global function definition for '.getnull'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.10-bioc/meat/MergeMaid.Rcheck/00check.log'
for details.

MergeMaid.Rcheck/00install.out:

* installing *source* package 'MergeMaid' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'MergeMaid'
Creating a generic function for 'hist' from package 'graphics' in package 'MergeMaid'
Creating a generic function for 'summary' from package 'base' in package 'MergeMaid'
** help
*** installing help indices
** building package indices
** installing vignettes
   'MergeMaid.Rnw' 
** testing if installed package can be loaded

* DONE (MergeMaid)

MergeMaid.Rcheck/MergeMaid-Ex.timings:

nameusersystemelapsed
class.mergeCoeff2.8830.0452.927
class.mergeCor5.4000.0525.452
class.mergeExpressionSet14.382 0.05214.439
intCor6.8870.1067.000
intcorDens28.790 0.26029.058
intersection0.7230.0230.746
mergeExprs6.7940.1376.939
modelOutcome3.9710.0274.000