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Package 321/553HostnameOS / ArchBUILDCHECKBUILD BIN
MANOR 1.28.0
Pierre Neuvial
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/MANOR
Last Changed Rev: 64678 / Revision: 69725
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: MANOR
Version: 1.28.0
Command: rm -rf MANOR.buildbin-libdir && mkdir MANOR.buildbin-libdir && E:\biocbld\bbs-2.10-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MANOR.buildbin-libdir MANOR_1.28.0.tar.gz
StartedAt: 2012-09-24 03:16:15 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 03:16:42 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 27.1 seconds
RetCode: 0
Status:  OK  
PackageFile: MANOR_1.28.0.zip
PackageFileSize: 1018 KiB

Command output


install for i386

* installing *source* package 'MANOR' ...
** libs
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O3 -Wall  -std=gnu99 -mtune=core2 -c Rnem_arg.c -o Rnem_arg.o
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O3 -Wall  -std=gnu99 -mtune=core2 -c Rnem_exe.c -o Rnem_exe.o
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O3 -Wall  -std=gnu99 -mtune=core2 -c exememo.c -o exememo.o
exememo.c: In function 'GenAlloc':
exememo.c:39:6: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' [-Wformat]
exememo.c:39:6: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t' [-Wformat]
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O3 -Wall  -std=gnu99 -mtune=core2 -c lib_io.c -o lib_io.o
lib_io.c: In function 'CountLinesColumns':
lib_io.c:399:16: warning: 'mincols' may be used uninitialized in this function [-Wuninitialized]
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O3 -Wall  -std=gnu99 -mtune=core2 -c nem_alg.c -o nem_alg.o
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O3 -Wall  -std=gnu99 -mtune=core2 -c nem_hlp.c -o nem_hlp.o
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O3 -Wall  -std=gnu99 -mtune=core2 -c nem_mod.c -o nem_mod.o
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O3 -Wall  -std=gnu99 -mtune=core2 -c nem_nei.c -o nem_nei.o
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O3 -Wall  -std=gnu99 -mtune=core2 -c nem_rnd.c -o nem_rnd.o
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O3 -Wall  -std=gnu99 -mtune=core2 -c nem_ver.c -o nem_ver.o
gcc -shared -s -static-libgcc -o MANOR.dll tmp.def Rnem_arg.o Rnem_exe.o exememo.o lib_io.o nem_alg.o nem_hlp.o nem_mod.o nem_nei.o nem_rnd.o nem_ver.o -LE:/biocbld/BBS-2˜1.10-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/MANOR.buildbin-libdir/MANOR/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'MANOR.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'MANOR' ...
** libs
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c Rnem_arg.c -o Rnem_arg.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c Rnem_exe.c -o Rnem_exe.o
Rnem_exe.c: In function 'MakeErrinfo':
Rnem_exe.c:216:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c exememo.c -o exememo.o
exememo.c: In function 'GenAlloc':
exememo.c:39:6: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' [-Wformat]
exememo.c:39:6: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t' [-Wformat]
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c lib_io.c -o lib_io.o
lib_io.c: In function 'CountLinesColumns':
lib_io.c:399:16: warning: 'mincols' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c nem_alg.c -o nem_alg.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c nem_hlp.c -o nem_hlp.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c nem_mod.c -o nem_mod.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c nem_nei.c -o nem_nei.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c nem_rnd.c -o nem_rnd.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c nem_ver.c -o nem_ver.o
gcc -m64 -shared -s -static-libgcc -o MANOR.dll tmp.def Rnem_arg.o Rnem_exe.o exememo.o lib_io.o nem_alg.o nem_hlp.o nem_mod.o nem_nei.o nem_rnd.o nem_ver.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2~1.10-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/MANOR.buildbin-libdir/MANOR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MANOR' as MANOR_1.28.0.zip

* DONE (MANOR)