Package: LMGene

Version: 2.12.0

Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings LMGene_2.12.0.tar.gz

StartedAt: 2012-09-24 01:55:43 -0700 (Mon, 24 Sep 2012)

EndedAt: 2012-09-24 01:58:16 -0700 (Mon, 24 Sep 2012)

EllapsedTime: 152.9 seconds

RetCode: 0

Status:  OK

CheckDir: LMGene.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/LMGene.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LMGene/DESCRIPTION’ ... OK
* this is package ‘LMGene’ version ‘2.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘LMGene’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘LMGene’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘LMGene.Rnw’ 
** testing if installed package can be loaded

* DONE (LMGene)

name	user	system	elapsed
LMGene	2.648	0.028	2.678
genediff	2.332	0.004	2.335
glog	0.004	0.000	0.005
lnorm	0.108	0.004	0.108
lnormeS	0.156	0.000	0.158
neweS	0.048	0.000	0.050
norm	0.056	0.004	0.059
plotMeanSD	0.1	0.0	0.1
psmeans	0.128	0.000	0.125
rowaov	2.424	0.004	2.429
sample.eS	0.052	0.004	0.059
sample.ind	0.120	0.000	0.121
sample.mat	0.052	0.004	0.060
tranest	12.877	0.004	12.885
tranestAffyProbeLevel	87.645	0.424	88.220
transeS	0.008	0.000	0.009
vlist	0.004	0.000	0.005