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Package 278/553HostnameOS / ArchBUILDCHECKBUILD BIN
IdMappingAnalysis 1.0.1
Alex Lisovich , Roger Day
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/IdMappingAnalysis
Last Changed Rev: 66461 / Revision: 69725
Last Changed Date: 2012-06-06 08:22:52 -0700 (Wed, 06 Jun 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: IdMappingAnalysis
Version: 1.0.1
Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings IdMappingAnalysis_1.0.1.tar.gz
StartedAt: 2012-09-24 01:41:02 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 01:42:37 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 94.2 seconds
RetCode: 0
Status:  OK 
CheckDir: IdMappingAnalysis.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/IdMappingAnalysis.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IdMappingAnalysis/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IdMappingAnalysis’ version ‘1.0.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘IdMappingAnalysis’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

IdMappingAnalysis.Rcheck/00install.out:

* installing *source* package ‘IdMappingAnalysis’ ...
** R
** data
**  moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘IdMappingAnalysis.Rnw’ using ‘latin-9’ 
** testing if installed package can be loaded

* DONE (IdMappingAnalysis)

IdMappingAnalysis.Rcheck/IdMappingAnalysis-Ex.timings:

nameusersystemelapsed
000-LB-.IdMapBase0.5880.0320.624
Bootstrap7.7840.0287.884
Corr0.5800.0080.599
CorrData0.1800.0000.177
CsvList.merge.Misc0.0000.0000.002
IdMap0.0040.0000.004
IdMapBase0.0000.0000.001
IdMapCounts0.5200.0000.523
IdMapDiff0.6160.0000.613
IdMapDiffCounts0.4480.0000.450
JointIdMap0.0720.0000.073
JointUniquePairs0.8720.0000.873
Mixture0.3320.0000.331
UniquePairs0.0040.0000.002
aligned.IdMapBase0.0080.0000.006
as.IdMap.UniquePairs0.0400.0000.042
as.MultiSet.CorrData1.0120.0041.017
as.UniquePairs.IdMap0.0280.0000.029
as.data.frame.IdMapBase0.2280.0000.229
as.data.frame.JointIdMap0.0760.0000.077
as.list.IdMap0.0240.0000.025
boxplot.JointUniquePairs0.0600.0040.062
byColNames.Subset0.0160.0000.014
byColumn.Subset0.0080.0000.007
byRow.Subset0.0160.0000.015
byRowNames.Subset0.0040.0000.005
clust.Mixture0.0040.0000.000
copy.Display000
corr.boxplot.JointUniquePairs0.0720.0000.074
corr.plot.JointUniquePairs0.0680.0000.067
create.Display000
create.UniquePairs0.2480.0000.249
diffCounts.plot.JointIdMap0.6160.0000.619
dim.IdMapBase0.0120.0000.012
dimnames.IdMapBase0.0240.0000.023
do.glm.JointUniquePairs0.0240.0000.026
ecdf.plot.JointIdMap0.2970.0000.293
equals.UniquePairs0.0400.0000.042
fisherTransform.DataFilter0.0000.0040.000
fisherTransformInverse.DataFilter000
fisherTransformJacobean.DataFilter000
getBootstrap.JointUniquePairs8.1040.0328.139
getCompoundEvents.IdMapDiffCounts0.4320.0080.457
getCompoundGroups.IdMapDiffCounts0.4840.0040.511
getCorr.JointUniquePairs0.0840.0000.448
getCorrData.JointUniquePairs0.3720.0000.469
getCorrDataFrame.JointUniquePairs0.0200.0000.028
getCounts.IdMap0.0280.0000.028
getCounts.JointIdMap0.2080.0000.212
getData.Corr0.0040.0000.000
getData.Mixture0.0000.0000.001
getDiff.JointIdMap0.3000.0000.298
getExperimentSet.CorrData0.1760.0040.182
getIdMapList.JointIdMap0.2200.0040.239
getMapNames.JointIdMap0.0720.0000.077
getMapNames.JointUniquePairs0.0040.0000.001
getMatch.UniquePairs0.0560.0000.063
getMatchInfo.JointIdMap0.0800.0000.085
getMatchInfo.JointUniquePairs0.5200.0000.553
getMixture.JointUniquePairs0.2200.0000.232
getSampleNames.CorrData0.0040.0000.001
getStats.IdMapCounts0.2240.0040.230
getStats.Mixture0.0000.0000.002
getUnionIdMap.JointIdMap0.5880.0040.614
getUniquePairs.Corr0.0040.0000.004
getUniquePairs.CorrData0.0040.0000.004
getUniquePairs.JointUniquePairs0.0040.0000.004
interactive.corr.boxplot.JointUniquePairs0.0840.0000.086
interactive.corr.plot.JointUniquePairs0.0600.0040.067
interactive.mixture.boxplot.JointUniquePairs0.2640.0000.281
interactive.mixture.plot.JointUniquePairs0.3880.0080.407
interactive.plot.CorrData0.0440.0000.044
interactive.plot.JointUniquePairs000
interleave.Misc000
line.loess.Display000
line.unsorted.Display000
log10.DataFilter0.0240.0000.021
merge.IdMap0.8080.0160.841
minAvgCountConstraint.DataFilter0.1920.0000.194
minCountConstraint.DataFilter0.3400.0040.342
minCountGroupConstraint.DataFilter0.2120.0000.213
mixture.boxplot.JointUniquePairs0.2640.0000.265
mixture.plot.JointUniquePairs0.2240.0000.224
plot.Bootstrap0.0800.0000.078
plot.Corr0.0680.0000.069
plot.CorrData0.0320.0000.035
plot.IdMapCounts0.3490.0080.355
plot.IdMapDiffCounts0.7040.0080.717
plot.Mixture0.0200.0000.021
primaryIDs.IdMapBase0.0040.0000.002
primaryKey.CorrData000
primaryKey.IdMapBase0.0040.0000.002
primaryKey.Mixture0.0000.0000.001
progressMsg.Display000
removeNASeries.DataFilter0.2280.0000.227
secondaryKey.CorrData000
secondaryKey.IdMapBase0.0000.0000.002
secondaryKey.Mixture0.0000.0000.001
subsetCorr.JointUniquePairs0.0160.0000.018
subsetData.JointUniquePairs0.0160.0000.018
subsetGroups.JointUniquePairs0.8280.0000.828
summary.IdMapDiffCounts0.5920.0000.590
swapKeys.IdMap0.0680.0000.070
swapKeys.UniquePairs0.0320.0000.034
textBoundingBox.Display000
to.base.Misc0.0000.0000.001
to.binary.logical.Misc0.0000.0000.001
to.index.expr.Misc000
unique.UniquePairs0.0760.0040.082
words.Misc000
zoom.pars.Display000