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Package 224/553HostnameOS / ArchBUILDCHECKBUILD BIN
GenomicRanges 1.8.13
Bioconductor Package Maintainer
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/GenomicRanges
Last Changed Rev: 68848 / Revision: 69725
Last Changed Date: 2012-08-27 13:46:58 -0700 (Mon, 27 Aug 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS [ OK ]
petty Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: GenomicRanges
Version: 1.8.13
Command: rm -rf GenomicRanges.buildbin-libdir && mkdir GenomicRanges.buildbin-libdir && E:\biocbld\bbs-2.10-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GenomicRanges.buildbin-libdir GenomicRanges_1.8.13.tar.gz
StartedAt: 2012-09-24 03:10:20 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 03:10:49 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 29.0 seconds
RetCode: 0
Status:  OK  
PackageFile: GenomicRanges_1.8.13.zip
PackageFileSize: 1.996 MiB

Command output


install for i386

* installing *source* package 'GenomicRanges' ...
** libs
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG    -I"E:/biocbld/bbs-2.10-bioc/R/library/IRanges/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc  -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG    -I"E:/biocbld/bbs-2.10-bioc/R/library/IRanges/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG    -I"E:/biocbld/bbs-2.10-bioc/R/library/IRanges/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c cigar_utils.c -o cigar_utils.o
cigar_utils.c: In function 'cigar_to_width':
cigar_utils.c:779:19: warning: 'width' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c: In function 'cigar_qnarrow':
cigar_utils.c:318:24: warning: 'OP' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c:286:7: note: 'OP' was declared here
cigar_utils.c:310:8: warning: 'OPL' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c:285:17: note: 'OPL' was declared here
cigar_utils.c: In function 'cigar_narrow':
cigar_utils.c:466:24: warning: 'OP' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c:434:7: note: 'OP' was declared here
cigar_utils.c:458:8: warning: 'OPL' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c:433:17: note: 'OPL' was declared here
cigar_utils.c: In function 'ref_locs_to_query_locs':
cigar_utils.c:1130:8: warning: 'n' may be used uninitialized in this function [-Wuninitialized]
gcc  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG    -I"E:/biocbld/bbs-2.10-bioc/R/library/IRanges/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:142:38: warning: 'end' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:119:24: note: 'end' was declared here
transcript_utils.c:142:38: warning: 'start' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:119:17: note: 'start' was declared here
transcript_utils.c:236:3: warning: 'nlocs' may be used uninitialized in this function [-Wuninitialized]
gcc -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o cigar_utils.o transcript_utils.o -LE:/biocbld/BBS-2˜1.10-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'GenomicRangesIntroduction.Rnw' 
   'GenomicRangesUseCases.Rnw' 
   'OverlapEncodings.Rnw' 
   'summarizeOverlaps.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'GenomicRanges' ...
** libs
gcc -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG    -I"E:/biocbld/bbs-2.10-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG    -I"E:/biocbld/bbs-2.10-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
gcc -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG    -I"E:/biocbld/bbs-2.10-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c cigar_utils.c -o cigar_utils.o
cigar_utils.c: In function 'cigar_to_width':
cigar_utils.c:779:19: warning: 'width' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c: In function 'ref_locs_to_query_locs':
cigar_utils.c:1130:8: warning: 'n' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG    -I"E:/biocbld/bbs-2.10-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:142:38: warning: 'end' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:119:24: note: 'end' was declared here
transcript_utils.c:142:38: warning: 'start' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:119:17: note: 'start' was declared here
transcript_utils.c:236:3: warning: 'nlocs' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o cigar_utils.o transcript_utils.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2~1.10-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicRanges' as GenomicRanges_1.8.13.zip

* DONE (GenomicRanges)