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Package 220/553HostnameOS / ArchBUILDCHECKBUILD BIN
GenomeGraphs 1.16.0
Steffen Durinck
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/GenomeGraphs
Last Changed Rev: 64678 / Revision: 69725
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GenomeGraphs
Version: 1.16.0
Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings GenomeGraphs_1.16.0.tar.gz
StartedAt: 2012-09-24 01:06:04 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 01:06:57 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 52.8 seconds
RetCode: 0
Status:  OK 
CheckDir: GenomeGraphs.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/GenomeGraphs.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GenomeGraphs/DESCRIPTION’ ... OK
* this is package ‘GenomeGraphs’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘GenomeGraphs’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gdPlot: warning in grid.layout(1, 2, width = c(0.1, 0.9)): partial
  argument match of 'width' to 'widths'
gdPlot: warning in grid.layout(length(vplayout), 1, height = vplayout):
  partial argument match of 'height' to 'heights'
transcriptModule: warning in grid.layout(1, length(vplayout), width =
  vplayout): partial argument match of 'width' to 'widths'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/GenomeGraphs.Rcheck/00check.log’
for details.

GenomeGraphs.Rcheck/00install.out:

* installing *source* package ‘GenomeGraphs’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘GenomeGraphs.Rnw’ 
** testing if installed package can be loaded

* DONE (GenomeGraphs)

GenomeGraphs.Rcheck/GenomeGraphs-Ex.timings:

nameusersystemelapsed
AnnotationTrack-class0.0000.0000.002
BaseTrack-class000
DisplayPars-class0.0000.0000.001
DisplayPars0.5080.0042.709
ExonArray-class0.0040.0000.004
Gene-class000
GeneModel-class0.1040.0080.115
GeneRegion-class000
GenericArray-class0.0000.0000.001
GenomeAxis-class0.0000.0000.001
HighlightRegion-class0.0040.0000.001
Ideogram-class0.0000.0000.001
ImplementsTrackOverlay-class0.0040.0000.001
Legend-class0.0000.0000.001
MappedRead-class000
Overlay-class0.0000.0000.001
RectangleOverlay-class000
Segmentation-class0.0000.0000.001
Smoothing-class0.0000.0000.001
TextOverlay-class000
Title-class000
TrackOverlay-class0.0000.0000.001
Transcript-class0.0040.0000.001
TranscriptRegion-class0.0000.0000.001
cn000
exonProbePos000
gdObject-class0.0040.0000.001
gdPlot1.7960.0324.161
getPar0.0040.0000.001
getSize000
ideogramTab0.0000.0000.003
intensity000
makeAnnotationTrack0.0280.0040.031
makeBaseTrack0.0040.0000.002
makeExonArray0.0000.0000.002
makeGene0.0000.0000.001
makeGeneModel000
makeGeneRegion0.0000.0000.001
makeGenericArray000
makeGenomeAxis0.0000.0000.001
makeIdeogram0.0000.0000.001
makeLegend000
makeRectangleOverlay0.0640.0000.065
makeSegmentation0.0520.0040.056
makeSmoothing0.0720.0000.073
makeTextOverlay0.0640.0040.066
makeTitle0.0000.0000.001
makeTranscript0.0000.0000.001
probestart000
segEnd000
segStart000
segments000
seqDataEx0.0240.0000.022
setPar0.0120.0000.013
showDisplayOptions0.0040.0000.001
unrData000
unrNProbes000
unrPositions000
yeastCons1000