Back to the "Multiple platform build/check report" A [B] C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 59/553HostnameOS / ArchBUILDCHECKBUILD BIN
BHC 1.8.0
Rich Savage
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/BHC
Last Changed Rev: 64678 / Revision: 69725
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: BHC
Version: 1.8.0
Command: rm -rf BHC.buildbin-libdir && mkdir BHC.buildbin-libdir && E:\biocbld\bbs-2.10-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BHC.buildbin-libdir BHC_1.8.0.tar.gz
StartedAt: 2012-09-24 02:59:43 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 03:00:29 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 45.4 seconds
RetCode: 0
Status:  OK  
PackageFile: BHC_1.8.0.zip
PackageFileSize: 706 KiB

Command output


install for i386

* installing *source* package 'BHC' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c BlockCovarianceMatrix.cpp -o BlockCovarianceMatrix.o
In file included from BlockCovarianceMatrix.h:16:0,
                 from BlockCovarianceMatrix.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c CubicSplineTimecourseDataSet.cpp -o CubicSplineTimecourseDataSet.o
In file included from DataSet.h:16:0,
                 from TimecourseDataSet.h:20,
                 from CubicSplineTimecourseDataSet.h:20,
                 from CubicSplineTimecourseDataSet.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c DataSet.cpp -o DataSet.o
In file included from DataSet.h:16:0,
                 from DataSet.cpp:13:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c DirichletProcessMixture.cpp -o DirichletProcessMixture.o
In file included from DirichletProcessMixture.h:4:0,
                 from DirichletProcessMixture.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
DirichletProcessMixture.cpp:187:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
DirichletProcessMixture.cpp:272:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
DirichletProcessMixture.cpp:299:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
DirichletProcessMixture.cpp:375:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c MultinomialDataSet.cpp -o MultinomialDataSet.o
In file included from DataSet.h:16:0,
                 from MultinomialDataSet.h:4,
                 from MultinomialDataSet.cpp:1:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c Node.cpp -o Node.o
In file included from Node.h:16:0,
                 from Node.cpp:13:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c RobustCubicSplineTimecourseDataSet.cpp -o RobustCubicSplineTimecourseDataSet.o
In file included from DataSet.h:16:0,
                 from TimecourseDataSet.h:20,
                 from CubicSplineTimecourseDataSet.h:20,
                 from RobustCubicSplineTimecourseDataSet.h:20,
                 from RobustCubicSplineTimecourseDataSet.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c RobustSquaredExponentialTimecourseDataSet.cpp -o RobustSquaredExponentialTimecourseDataSet.o
In file included from SquaredExponentialTimecourseDataSet.h:20:0,
                 from RobustSquaredExponentialTimecourseDataSet.h:20,
                 from RobustSquaredExponentialTimecourseDataSet.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c SquaredExponentialTimecourseDataSet.cpp -o SquaredExponentialTimecourseDataSet.o
In file included from SquaredExponentialTimecourseDataSet.h:20:0,
                 from SquaredExponentialTimecourseDataSet.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
SquaredExponentialTimecourseDataSet.cpp: In member function 'void SquaredExponentialTimecourseDataSet::OptimiseHyperparametersEstimatedNoise(std::vector, double&, double&, double&, double)':
SquaredExponentialTimecourseDataSet.cpp:339:30: warning: variable 'gridLogEvidence' set but not used [-Wunused-but-set-variable]
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c TimecourseDataSet.cpp -o TimecourseDataSet.o
In file included from DataSet.h:16:0,
                 from TimecourseDataSet.h:20,
                 from TimecourseDataSet.cpp:13:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c bhc.cpp -o bhc.o
In file included from bhc.cpp:17:0:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c gammaln.cpp -o gammaln.o
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c header.cpp -o header.o
In file included from header.cpp:1:0:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c multinomial_CalculateHyperparameters.cpp -o multinomial_CalculateHyperparameters.o
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c multinomial_OutputDendrogramInformation.cpp -o multinomial_OutputDendrogramInformation.o
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c multinomial_ReadInData.cpp -o multinomial_ReadInData.o
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c multinomial_bayeslink_binf.cpp -o multinomial_bayeslink_binf.o
g++  -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG          -O2 -Wall  -mtune=core2 -c multinomial_binevidence.cpp -o multinomial_binevidence.o
g++ -shared -s -static-libgcc -o BHC.dll tmp.def BlockCovarianceMatrix.o CubicSplineTimecourseDataSet.o DataSet.o DirichletProcessMixture.o MultinomialDataSet.o Node.o RobustCubicSplineTimecourseDataSet.o RobustSquaredExponentialTimecourseDataSet.o SquaredExponentialTimecourseDataSet.o TimecourseDataSet.o bhc.o gammaln.o header.o multinomial_CalculateHyperparameters.o multinomial_OutputDendrogramInformation.o multinomial_ReadInData.o multinomial_bayeslink_binf.o multinomial_binevidence.o -LE:/biocbld/BBS-2~1.10-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/BHC.buildbin-libdir/BHC/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'bhc.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'BHC' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c BlockCovarianceMatrix.cpp -o BlockCovarianceMatrix.o
In file included from BlockCovarianceMatrix.h:16:0,
                 from BlockCovarianceMatrix.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++ -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c CubicSplineTimecourseDataSet.cpp -o CubicSplineTimecourseDataSet.o
In file included from DataSet.h:16:0,
                 from TimecourseDataSet.h:20,
                 from CubicSplineTimecourseDataSet.h:20,
                 from CubicSplineTimecourseDataSet.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c DataSet.cpp -o DataSet.o
In file included from DataSet.h:16:0,
                 from DataSet.cpp:13:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c DirichletProcessMixture.cpp -o DirichletProcessMixture.o
In file included from DirichletProcessMixture.h:4:0,
                 from DirichletProcessMixture.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
DirichletProcessMixture.cpp:187:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
DirichletProcessMixture.cpp:272:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
DirichletProcessMixture.cpp:299:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
DirichletProcessMixture.cpp:375:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c MultinomialDataSet.cpp -o MultinomialDataSet.o
In file included from DataSet.h:16:0,
                 from MultinomialDataSet.h:4,
                 from MultinomialDataSet.cpp:1:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c Node.cpp -o Node.o
In file included from Node.h:16:0,
                 from Node.cpp:13:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++ -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c RobustCubicSplineTimecourseDataSet.cpp -o RobustCubicSplineTimecourseDataSet.o
In file included from DataSet.h:16:0,
                 from TimecourseDataSet.h:20,
                 from CubicSplineTimecourseDataSet.h:20,
                 from RobustCubicSplineTimecourseDataSet.h:20,
                 from RobustCubicSplineTimecourseDataSet.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++ -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c RobustSquaredExponentialTimecourseDataSet.cpp -o RobustSquaredExponentialTimecourseDataSet.o
In file included from SquaredExponentialTimecourseDataSet.h:20:0,
                 from RobustSquaredExponentialTimecourseDataSet.h:20,
                 from RobustSquaredExponentialTimecourseDataSet.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++ -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c SquaredExponentialTimecourseDataSet.cpp -o SquaredExponentialTimecourseDataSet.o
In file included from SquaredExponentialTimecourseDataSet.h:20:0,
                 from SquaredExponentialTimecourseDataSet.cpp:15:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
SquaredExponentialTimecourseDataSet.cpp: In member function 'void SquaredExponentialTimecourseDataSet::OptimiseHyperparametersEstimatedNoise(std::vector, double&, double&, double&, double)':
SquaredExponentialTimecourseDataSet.cpp:339:30: warning: variable 'gridLogEvidence' set but not used [-Wunused-but-set-variable]
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c TimecourseDataSet.cpp -o TimecourseDataSet.o
In file included from DataSet.h:16:0,
                 from TimecourseDataSet.h:20,
                 from TimecourseDataSet.cpp:13:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c bhc.cpp -o bhc.o
In file included from bhc.cpp:17:0:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c gammaln.cpp -o gammaln.o
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c header.cpp -o header.o
In file included from header.cpp:1:0:
header.h:16:0: warning: "NDEBUG" redefined [enabled by default]
<command-line>:0:0: note: this is the location of the previous definition
g++ -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c multinomial_CalculateHyperparameters.cpp -o multinomial_CalculateHyperparameters.o
g++ -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c multinomial_OutputDendrogramInformation.cpp -o multinomial_OutputDendrogramInformation.o
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c multinomial_ReadInData.cpp -o multinomial_ReadInData.o
g++ -m64 -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c multinomial_bayeslink_binf.cpp -o multinomial_bayeslink_binf.o
g++ -m64 -I"E:/biocbld/BBS-2˜1.10-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c multinomial_binevidence.cpp -o multinomial_binevidence.o
g++ -m64 -shared -s -static-libgcc -o BHC.dll tmp.def BlockCovarianceMatrix.o CubicSplineTimecourseDataSet.o DataSet.o DirichletProcessMixture.o MultinomialDataSet.o Node.o RobustCubicSplineTimecourseDataSet.o RobustSquaredExponentialTimecourseDataSet.o SquaredExponentialTimecourseDataSet.o TimecourseDataSet.o bhc.o gammaln.o header.o multinomial_CalculateHyperparameters.o multinomial_OutputDendrogramInformation.o multinomial_ReadInData.o multinomial_bayeslink_binf.o multinomial_binevidence.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2~1.10-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/BHC.buildbin-libdir/BHC/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BHC' as BHC_1.8.0.zip

* DONE (BHC)