Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S [T] U  V  W  X  Y  Z 

Package 224/233HostnameOS / ArchBUILDCHECKBUILD BIN
twilight 1.14.1
Stefanie Scheid
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/twilight
Last Changed Rev: 27779 / Revision: 30966
Last Changed Date: 2007-10-05 10:47:46 -0700 (Fri, 05 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: twilight
Version: 1.14.1
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check twilight_1.14.1.tar.gz
StartedAt: 2008-04-09 22:21:14 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 22:31:52 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 637.8 seconds
RetCode: 0
Status: OK
CheckDir: twilight.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/twilight.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'twilight/DESCRIPTION' ... OK
* this is package 'twilight' version '1.14.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'twilight' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
twilight: no visible global function definition for 'makeCluster'
twilight: no visible global function definition for 'clusterEvalQ'
twilight: no visible binding for '<<-' assignment to
  '.twilight.lambda.xxx'
twilight: no visible binding for '<<-' assignment to
  '.twilight.pval.xxx'
twilight: no visible binding for '<<-' assignment to
  '.twilight.score.xxx'
twilight: no visible global function definition for 'clusterExport'
twilight: no visible global function definition for 'parCapply'
twilight: no visible binding for global variable '.twilight.lambda.xxx'
twilight: no visible binding for global variable '.twilight.pval.xxx'
twilight: no visible binding for global variable '.twilight.score.xxx'
twilight: no visible global function definition for 'stopCluster'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating twilight-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating twilight-manual.tex ... OK
* checking twilight-manual.tex ... OK

twilight.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/twilight.Rcheck


---------- Making package twilight ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making confidence.line.d from confidence.line.c
making correlation.d from correlation.c
making kstest.d from kstest.c
making sep.d from sep.c
making twosample.perm.d from twosample.perm.c
making twosample.single.d from twosample.single.c
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c confidence.line.c -o confidence.line.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c correlation.c -o correlation.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c kstest.c -o kstest.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c sep.c -o sep.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c twosample.perm.c -o twosample.perm.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c twosample.single.c -o twosample.single.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include  -i twilight_res.rc -o twilight_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o twilight.dll twilight.def confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o twilight_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'twilight'
     Formats: text html latex example chm 
  exfdr                             text    html    latex           chm
  expval                            text    html    latex           chm
  plot.twilight                     text    html    latex   example chm
  print.twilight                    text    html    latex   example chm
  twilight                          text    html    latex   example chm
  twilight.combi                    text    html    latex   example chm
  twilight.filtering                text    html    latex   example chm
  twilight.getlambda                text    html    latex           chm
  twilight.getmatrix                text    html    latex           chm
  twilight.permute.pair             text    html    latex           chm
  twilight.permute.unpair           text    html    latex           chm
  twilight.pval                     text    html    latex   example chm
  twilight.teststat                 text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\twilight.Rcheck\00_pkg_src\twilight\chm\twilight.chm

HHC4016: Warning: Cannot open "Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".


The following files were not compiled:
  preparing package twilight for lazy loading
Loading required package: splines
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

  adding MD5 sums

* DONE (twilight)