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Package 192/233HostnameOS / ArchBUILDCHECKBUILD BIN
rsbml 1.4.0
Michael Lawrence
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/rsbml
Last Changed Rev: 28216 / Revision: 30966
Last Changed Date: 2007-10-24 23:40:40 -0700 (Wed, 24 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386 N O T   S U P P O R T E D
Package: rsbml
Version: 1.4.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=rsbml.buildbin-libdir rsbml_1.4.0.tar.gz
StartedAt: 2008-04-09 23:31:59 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 23:33:21 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 82.5 seconds
RetCode: 0
Status: OK
PackageFile: rsbml_1.4.0.zip
PackageFileSize: 1.176 MiB

Command output

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/rsbml.buildbin-libdir

Using auto-selected zip options ' rsbml-HELP=ziponly'

---------- Making package rsbml ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making check.d from check.c
making doc.d from doc.c
making dom.d from dom.c
making graph.d from graph.c
making init.d from init.c
making io.d from io.c
gcc-sjlj  -std=gnu99  -ID:/biocbld/bbs-2.1-bioc/R/include   -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.1-bioc/R/include  -O3 -Wall  -c check.c -o check.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
                 from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
                 from rsbml.h:4,
                 from check.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning 
gcc-sjlj  -std=gnu99  -ID:/biocbld/bbs-2.1-bioc/R/include   -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.1-bioc/R/include  -O3 -Wall  -c doc.c -o doc.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
                 from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
                 from rsbml.h:4,
                 from doc.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning 
gcc-sjlj  -std=gnu99  -ID:/biocbld/bbs-2.1-bioc/R/include   -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.1-bioc/R/include  -O3 -Wall  -c dom.c -o dom.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
                 from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
                 from rsbml.h:4,
                 from dom.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning 
gcc-sjlj  -std=gnu99  -ID:/biocbld/bbs-2.1-bioc/R/include   -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.1-bioc/R/include  -O3 -Wall  -c graph.c -o graph.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
                 from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
                 from rsbml.h:4,
                 from graph.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning 
gcc-sjlj  -std=gnu99  -ID:/biocbld/bbs-2.1-bioc/R/include   -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.1-bioc/R/include  -O3 -Wall  -c init.c -o init.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
                 from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
                 from rsbml.h:4,
                 from init.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning 
gcc-sjlj  -std=gnu99  -ID:/biocbld/bbs-2.1-bioc/R/include   -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.1-bioc/R/include  -O3 -Wall  -c io.c -o io.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
                 from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
                 from rsbml.h:4,
                 from io.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning 
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning 
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I D:/biocbld/bbs-2.1-bioc/R/include  -i rsbml_res.rc -o rsbml_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o rsbml.dll rsbml.def check.o doc.o dom.o graph.o init.o io.o rsbml_res.o  -LD:/biocbld/bbs-2.1-bioc/R/bin -LC:/SBML/libsbml-2.3.4-expat/win32/bin -lsbml   -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'rsbml'
     Formats: text html latex example chm 
  AlgebraicRule-class               text    html    latex           chm
  AssignmentRule-class              text    html    latex           chm
  BoundingBox-class                 text    html    latex           chm
  Compartment-class                 text    html    latex           chm
  CompartmentGlyph-class            text    html    latex           chm
  CompartmentType-class             text    html    latex           chm
  CompartmentVolumeRule-class       text    html    latex           chm
  Constraint-class                  text    html    latex           chm
  CubicBezier-class                 text    html    latex           chm
  Curve-class                       text    html    latex           chm
  Delay-class                       text    html    latex           chm
  Dimensions-class                  text    html    latex           chm
  Event-class                       text    html    latex           chm
  EventAssignment-class             text    html    latex           chm
  FunctionDefinition-class          text    html    latex           chm
  GraphicalObject-class             text    html    latex           chm
  InitialAssignment-class           text    html    latex           chm
  KineticLaw-class                  text    html    latex           chm
  Layout-class                      text    html    latex           chm
  LineSegment-class                 text    html    latex           chm
  Model-class                       text    html    latex           chm
  ModifierSpeciesReference-class    text    html    latex           chm
  Parameter-class                   text    html    latex           chm
  ParameterRule-class               text    html    latex           chm
  Point-class                       text    html    latex           chm
  RateRule-class                    text    html    latex           chm
  Reaction-class                    text    html    latex           chm
  ReactionGlyph-class               text    html    latex           chm
  Rule-class                        text    html    latex           chm
  SBML-class                        text    html    latex   example chm
  SBMLDocument-class                text    html    latex   example chm
  SBase-class                       text    html    latex           chm
  SimpleSpeciesReference-class      text    html    latex           chm
  Species-class                     text    html    latex           chm
  SpeciesConcentrationRule-class    text    html    latex           chm
  SpeciesGlyph-class                text    html    latex           chm
  SpeciesReference-class            text    html    latex           chm
  SpeciesReferenceGlyph-class       text    html    latex           chm
  SpeciesType-class                 text    html    latex           chm
  StoichiometryMath-class           text    html    latex           chm
  TextGlyph-class                   text    html    latex           chm
  Trigger-class                     text    html    latex           chm
  Unit-class                        text    html    latex           chm
  UnitDefinition-class              text    html    latex           chm
  read                              text    html    latex   example chm
  zipping help files
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "AC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.588\rsbml\chm\rsbml.chm



HHC4016: Warning: Cannot open "AC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  preparing package rsbml for lazy loading
Loading required package: graph
New generic for "curve" does not agree with implicit generic from package "graphics"; a new generic will be assigned with package "rsbml"
New generic for "delay" does not agree with implicit generic from package "base"; a new generic will be assigned with package "rsbml"
New generic for "scale" does not agree with implicit generic from package "base"; a new generic will be assigned with package "rsbml"
  adding MD5 sums

packaged installation of package 'rsbml' as rsbml_1.4.0.zip
* DONE (rsbml)