Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O [P] Q  R  S  T  U  V  W  X  Y  Z 

Package 158/233HostnameOS / ArchBUILDCHECKBUILD BIN
pdInfoBuilder 1.2.0
Vince Carey
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/pdInfoBuilder
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: pdInfoBuilder
Version: 1.2.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build pdInfoBuilder
StartedAt: 2008-04-09 17:23:01 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 17:24:02 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 60.5 seconds
RetCode: 0
Status: OK
PackageFile: pdInfoBuilder_1.2.0.tar.gz
PackageFileSize: 88.01 KiB

Command output

* checking for file 'pdInfoBuilder/DESCRIPTION' ... OK
* preparing 'pdInfoBuilder':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst32034719


---------- Making package pdInfoBuilder ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making pdInfoBuilder.d from pdInfoBuilder.c
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c pdInfoBuilder.c -o pdInfoBuilder.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include  -i pdInfoBuilder_res.rc -o pdInfoBuilder_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o pdInfoBuilder.dll pdInfoBuilder.def pdInfoBuilder.o pdInfoBuilder_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  preparing package pdInfoBuilder for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RSQLite
Loading required package: DBI
Loading required package: affxparser
Loading required package: oligo
Loading required package: splines
Loading required package: preprocessCore
Loading required package: AnnotationDbi
Loading required package: oligoClasses
This is the oligo package

Attaching package: 'oligo'


	The following object(s) are masked from package:oligoClasses :

	 calls,
	 calls<-,
	 callsConfidence,
	 callsConfidence<-,
	 cnConfidence,
	 cnConfidence<-,
	 copyNumber,
	 copyNumber<- 

  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'pdInfoBuilder'
     Formats: text html latex example chm 
  AffySNPCNVPDInfoPkgSeed-class     text    html    latex   example chm
  AffySNPPDInfoPkgSeed-class        text    html    latex   example chm
  PDInfoPkgSeed-class               text    html    latex   example chm
  PkgSeed-class                     text    html    latex   example chm
  chipName                          text    html    latex           chm
  makePdInfoPackage                 text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "ram Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\pdInfoBuilder\chm\pdInfoBuilder.chm



HHC4016: Warning: Cannot open "ram Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  adding MD5 sums

* DONE (pdInfoBuilder)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'pdInfoBuilder_1.2.0.tar.gz'