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Package 149/233HostnameOS / ArchBUILDCHECKBUILD BIN
oneChannelGUI 1.4.5
Raffaele A Calogero
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/oneChannelGUI
Last Changed Rev: 30353 / Revision: 30966
Last Changed Date: 2008-03-04 09:51:38 -0800 (Tue, 04 Mar 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: oneChannelGUI
Version: 1.4.5
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check oneChannelGUI_1.4.5.tar.gz
StartedAt: 2008-04-09 20:53:39 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 21:03:43 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 603.3 seconds
RetCode: 0
Status: OK
CheckDir: oneChannelGUI.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/oneChannelGUI.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'oneChannelGUI/DESCRIPTION' ... OK
* this is package 'oneChannelGUI' version '1.4.5'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'oneChannelGUI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.aptDir: no visible binding for global variable '.affylmGUIglobals'
.consistentFilter: no visible binding for global variable
  '.affylmGUIglobals'
.consistentFilter: no visible binding for global variable
  'affylmGUIenvironment'
.consistentFilter : onOK: no visible binding for global variable
  'affylmGUIenvironment'
.consistentFilter : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
.downloadLibs: no visible binding for global variable
  '.affylmGUIglobals'
.downloadLibs: no visible binding for global variable
  'affylmGUIenvironment'
.gettingEG: no visible binding for global variable
  'affylmGUIenvironment'
addAnnLib: no visible binding for global variable
  'affylmGUIenvironment'
addAnnLib: no visible binding for global variable '.affylmGUIglobals'
addAnnLib : onOK: no visible binding for global variable
  'affylmGUIenvironment'
addAnnLib : onOK: no visible binding for global variable
  '.affylmGUIglobals'
addAnnLib : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
affyPlotMA: no visible binding for global variable
  'affylmGUIenvironment'
affyPlotMA: no visible binding for global variable '.affylmGUIglobals'
affyPlotMA : plotFunction: no visible binding for global variable
  '.affylmGUIglobals'
affyPlotMA : CopyToClip: no visible global function definition for
  'tkrreplot'
affyPlotMA: no visible global function definition for 'tkrplot'
aptFolder: no visible binding for global variable
  'affylmGUIenvironment'
aptFolder: no visible binding for global variable '.affylmGUIglobals'
AptMidas: no visible binding for global variable 'affylmGUIenvironment'
AptMidas: no visible binding for global variable '.affylmGUIglobals'
AptMidas: no visible binding for global variable 'tmp'
AptMidas: no visible binding for global variable 'tt'
changeMenu: no visible binding for global variable
  'affylmGUIenvironment'
changeMenu: no visible binding for global variable '.affylmGUIglobals'
chooseEDir: no visible binding for global variable '.affylmGUIglobals'
combineGeoMSF: no visible binding for global variable
  '.affylmGUIglobals'
combineGeoMSF : onOK: no visible binding for global variable
  '.affylmGUIglobals'
combineGeoMSF : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
combineGeoMSF: no visible binding for global variable
  'affylmGUIenvironment'
ComputeContrasts: no visible binding for global variable
  'affylmGUIenvironment'
ComputeLinearModelFit: no visible binding for global variable
  'affylmGUIenvironment'
ComputeLinearModelFit: no visible binding for global variable
  '.affylmGUIglobals'
consistentFilters: no visible binding for global variable
  '.affylmGUIglobals'
consistentFilters: no visible binding for global variable
  'affylmGUIenvironment'
consistentFilters : onOK: no visible binding for '<<-' assignment to
  'ReturnFilter'
consistentFilters : onOK: no visible binding for global variable
  '.affylmGUIglobals'
consistentFilters : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
consistentFilters : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
consistentFilters: no visible binding for global variable
  'ReturnFilter'
consistentFilters : onOK: no visible binding for global variable
  'affylmGUIenvironment'
createGeoTarget: no visible binding for global variable
  '.affylmGUIglobals'
crosshybFilter: no visible binding for global variable
  'affylmGUIenvironment'
crosshybFilter: no visible binding for global variable
  '.affylmGUIglobals'
crosshybFilter : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
crosshybFilter : onOK: no visible binding for global variable
  '.affylmGUIglobals'
crosshybFilter : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
dabgFilter: no visible binding for global variable '.affylmGUIglobals'
dabgFilter : onOK: no visible binding for '<<-' assignment to
  'ReturnVal'
dabgFilter : onOK: no visible binding for global variable
  '.affylmGUIglobals'
dabgFilter : onCancel: no visible binding for '<<-' assignment to
  'ReturnVal'
dabgFilter : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
dabgFilter : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
dabgFilter: no visible binding for global variable 'ReturnVal'
delete.ML: no visible binding for global variable
  'affylmGUIenvironment'
delete.ML: no visible binding for global variable '.affylmGUIglobals'
deleteLocalData: no visible binding for global variable
  '.affylmGUIglobals'
dfMAplot: no visible binding for global variable '.affylmGUIglobals'
dfMAplot : onOK: no visible binding for '<<-' assignment to 'ReturnVal'
dfMAplot : onOK: no visible binding for global variable
  '.affylmGUIglobals'
dfMAplot : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
dfMAplot : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
dfMAplot: no visible binding for global variable 'ReturnVal'
EG2probeset: no visible binding for global variable '.affylmGUIglobals'
EG2probeset: no visible binding for global variable
  'affylmGUIenvironment'
erankProdAltSpl: no visible binding for global variable
  'affylmGUIenvironment'
erankProdAltSpl: no visible binding for global variable
  '.affylmGUIglobals'
erankProdAltSpl : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
erankProdAltSpl : onOK: no visible binding for global variable
  '.affylmGUIglobals'
erankProdAltSpl : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
erankProdAltSplFilter: no visible binding for global variable
  'affylmGUIenvironment'
erankProdAltSplFilter: no visible binding for global variable
  '.affylmGUIglobals'
erankProdAltSplFilter : onOK: no visible binding for global variable
  'affylmGUIenvironment'
erankProdAltSplFilter : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
ExportNormalizedExpressionValues: no visible binding for global
  variable 'affylmGUIenvironment'
ExportNormalizedExpressionValues1: no visible binding for global
  variable 'affylmGUIenvironment'
extractAffyids: no visible binding for global variable
  '.affylmGUIglobals'
extractAffyids: no visible binding for global variable
  'affylmGUIenvironment'
extractAffyids : onOK: no visible binding for global variable
  'affylmGUIenvironment'
extractAffyids : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
extractAffyids : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
filteringTable: no visible binding for global variable
  '.affylmGUIglobals'
geneExonLibs: no visible binding for global variable
  'affylmGUIenvironment'
geneExonLibs: no visible binding for global variable
  '.affylmGUIglobals'
GetNormalizationMethod: no visible binding for global variable
  '.affylmGUIglobals'
GetNormalizationMethod : onCancel: no visible binding for global
  variable '.affylmGUIglobals'
GetNormalizationMethod : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetNormalizationMethod : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible binding for global variable
  'affylmGUIenvironment'
GOenrichment : onOK: no visible binding for '<<-' assignment to
  'ReturnVal'
GOenrichment : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
GOenrichment: no visible binding for global variable 'ReturnVal'
GOenrichment : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
initialize.extAffylmGUI: no visible binding for global variable
  'affylmGUIenvironment'
initialize.extAffylmGUI: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.one.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.one.splice.index: no visible binding for global variable
  'affylmGUIenvironment'
inspecting.one.splice.index : onOK: no visible binding for global
  variable 'affylmGUIenvironment'
inspecting.one.splice.index : <anonymous>: no visible binding for
  global variable '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  '.affylmGUIglobals'
inspecting.splice.index: no visible binding for global variable
  'affylmGUIenvironment'
intensityFilter: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter : onOK: no visible binding for '<<-' assignment to
  'ReturnVal'
intensityFilter : onOK: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter : onCancel: no visible binding for '<<-' assignment to
  'ReturnVal'
intensityFilter : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
intensityFilter: no visible binding for global variable 'ReturnVal'
intronicBg: no visible binding for global variable
  'affylmGUIenvironment'
intronicBg: no visible binding for global variable '.affylmGUIglobals'
intronicBg : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
intronicBg : onOK: no visible binding for global variable
  'affylmGUIenvironment'
intronicBg : onOK: no visible binding for global variable
  '.affylmGUIglobals'
intronicBg : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
IPAlistFilter: no visible binding for global variable
  '.affylmGUIglobals'
iqrFilter: no visible binding for global variable '.affylmGUIglobals'
iqrFilter : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
iqrFilter : onOK: no visible binding for global variable
  '.affylmGUIglobals'
iqrFilter : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
largedatasetNorm: no visible binding for global variable
  'affylmGUIenvironment'
largedatasetNorm: no visible binding for global variable
  '.affylmGUIglobals'
largedatasetNorm : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
largedatasetNorm : onOK: no visible binding for global variable
  '.affylmGUIglobals'
largedatasetNorm : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
libraryFilesDir: no visible binding for global variable
  '.affylmGUIglobals'
listFilter: no visible binding for global variable
  'affylmGUIenvironment'
listFilter: no visible binding for global variable '.affylmGUIglobals'
listFilter : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
masigpro: no visible binding for global variable 'affylmGUIenvironment'
masigpro: no visible binding for global variable '.affylmGUIglobals'
masigpro : onOK: no visible binding for global variable
  '.affylmGUIglobals'
masigpro : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
masigpro : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.edesign: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.edesign: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.edesign : onClose: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.edesign : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view: no visible binding for global variable
  'affylmGUIenvironment'
masigpro.view: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view : onOK: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
masigpro.view : plotFunction: no visible binding for global variable
  'include'
masigpro.view: no visible global function definition for 'tkrplot'
masigpro.view : onOK: no visible binding for global variable
  'affylmGUIenvironment'
metaArrayIC: no visible binding for global variable
  'affylmGUIenvironment'
metaArrayIC: no visible binding for global variable '.affylmGUIglobals'
metaArrayMerge : OpenAFile: no visible binding for global variable
  '.affylmGUIglobals'
metaArrayMerge: no visible binding for global variable
  'affylmGUIenvironment'
metaArrayMerge: no visible binding for global variable
  '.affylmGUIglobals'
metaArrayMerge : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
metaArrayMerge : onOK: no visible binding for global variable
  '.affylmGUIglobals'
metaArrayMerge : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
midasFilter: no visible binding for global variable
  'affylmGUIenvironment'
midasFilter: no visible binding for global variable '.affylmGUIglobals'
midasFilter : onOK: no visible binding for global variable
  'affylmGUIenvironment'
midasFilter : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
ML.edesign: no visible binding for global variable
  'affylmGUIenvironment'
ML.edesign: no visible binding for global variable '.affylmGUIglobals'
ML.edesign : onClose: no visible binding for global variable
  '.affylmGUIglobals'
ML.edesign : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
myExpresso: no visible binding for global variable
  'affylmGUIenvironment'
myExpresso: no visible binding for global variable '.affylmGUIglobals'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NormalizeNow: no visible binding for global variable
  'affylmGUIenvironment'
NormalizeNow: no visible binding for global variable
  '.affylmGUIglobals'
normBoxplot: no visible binding for global variable
  'affylmGUIenvironment'
normBoxplot: no visible binding for global variable '.affylmGUIglobals'
ocPlotHist: no visible binding for global variable
  'affylmGUIenvironment'
ocPlotHist: no visible binding for global variable '.affylmGUIglobals'
ocPlotHist : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
ocPlotHist : onOK: no visible binding for global variable
  '.affylmGUIglobals'
ocPlotHist : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
ocPlotPCA: no visible binding for global variable
  'affylmGUIenvironment'
ocPlotPCA: no visible binding for global variable '.affylmGUIglobals'
ocPlotPCA : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
ocPlotPCA : onOK: no visible binding for global variable
  '.affylmGUIglobals'
ocPlotPCA : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
oneChannelGUI: no visible binding for global variable
  'affylmGUIenvironment'
oneChannelGUI: no visible binding for global variable
  '.affylmGUIglobals'
OpenAFile: no visible binding for global variable '.affylmGUIglobals'
OpenAGeoFile: no visible binding for global variable
  '.affylmGUIglobals'
OpenAGeoFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenBeadStudioFiles : onOK: no visible binding for global variable
  'affylmGUIenvironment'
OpenBeadStudioFiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenCDFandTargetsfiles : onOK: no visible binding for global variable
  'affylmGUIenvironment'
OpenCDFandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles : onOK: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenExonandTargetsfiles: no visible binding for '<<-' assignment to
  'ReturnValX'
OpenExonandTargetsfiles : onOK: no visible binding for '<<-' assignment
  to 'ReturnValX'
OpenExonandTargetsfiles: no visible binding for global variable
  'ReturnValX'
OpenGeoFiles : onOK: no visible binding for global variable
  'affylmGUIenvironment'
OpenGeoFiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenGeoFiles: no visible binding for global variable 'geoVSbioc'
OpenLargefiles : onOK: no visible binding for global variable
  'affylmGUIenvironment'
OpenLargefiles: no visible binding for global variable
  'affylmGUIenvironment'
plierToZero: no visible binding for global variable
  'affylmGUIenvironment'
plierToZero: no visible binding for global variable '.affylmGUIglobals'
plotGO: no visible binding for global variable 'affylmGUIenvironment'
plotGO: no visible binding for global variable '.affylmGUIglobals'
plotGO : onOK: no visible binding for global variable
  'affylmGUIenvironment'
plotGO : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
plotGO : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
plotGO : onOK: no visible binding for global variable
  '.affylmGUIglobals'
PlotOptionsv1: no visible binding for global variable
  '.affylmGUIglobals'
PlotOptionsv1 : onOK: no visible binding for global variable
  '.affylmGUIglobals'
PlotOptionsv1 : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
rankProd: no visible binding for global variable 'affylmGUIenvironment'
rankProd: no visible binding for global variable '.affylmGUIglobals'
rankProd : onOK: no visible binding for '<<-' assignment to 'ReturnVal'
rankProd : onOK: no visible binding for global variable
  '.affylmGUIglobals'
rankProd : onCancel: no visible binding for '<<-' assignment to
  'ReturnVal'
rankProd : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
rankProd : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
rankProd: no visible binding for global variable 'ReturnVal'
rankProd: no visible binding for global variable 'annlib'
rawpCheck: no visible binding for global variable
  'affylmGUIenvironment'
rawpCheck: no visible binding for global variable '.affylmGUIglobals'
recoverUnfiltered: no visible binding for global variable
  '.affylmGUIglobals'
recoverUnfiltered: no visible binding for global variable
  'affylmGUIenvironment'
recoverUnfiltered: no visible binding for global variable 'x'
recoverUnfiltered: no visible binding for global variable 'x.exon'
reviqrFilter: no visible binding for global variable
  '.affylmGUIglobals'
reviqrFilter : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
reviqrFilter : onOK: no visible binding for global variable
  '.affylmGUIglobals'
reviqrFilter : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation : onOK: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
sample.size.evaluation : common.sd: no visible binding for global
  variable 'affylmGUIenvironment'
sample.size.evaluation : onCancel: no visible binding for global
  variable '.affylmGUIglobals'
sample.size.evaluation : onOK: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1: no visible binding for global variable
  'affylmGUIenvironment'
sample.size.evaluation1: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1 : onCancel: no visible binding for global
  variable '.affylmGUIglobals'
sample.size.evaluation1 : onOK: no visible binding for global variable
  '.affylmGUIglobals'
sample.size.evaluation1 : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
sample.size.evaluation1 : common.sd: no visible binding for global
  variable 'affylmGUIenvironment'
SaveAsLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
SaveAsLimmaFile: no visible binding for global variable
  '.affylmGUIglobals'
SetED: no visible binding for global variable '.affylmGUIglobals'
showDataset: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable: no visible binding for global variable 'annlib'
siggenes: no visible binding for global variable 'affylmGUIenvironment'
siggenes: no visible binding for global variable '.affylmGUIglobals'
siggenes : onOK: no visible binding for global variable
  'affylmGUIenvironment'
siggenes : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
siggenes: no visible binding for global variable 'annlib'
simFilter: no visible binding for global variable '.affylmGUIglobals'
simFilter : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
spliceIndex: no visible binding for global variable
  'affylmGUIenvironment'
spliceIndex: no visible binding for global variable '.affylmGUIglobals'
templA: no visible binding for global variable 'affylmGUIenvironment'
templA: no visible binding for global variable '.affylmGUIglobals'
templA : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
templA : onOK: no visible binding for global variable
  '.affylmGUIglobals'
templA : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
trainTest: no visible binding for global variable
  'affylmGUIenvironment'
trainTest: no visible binding for global variable '.affylmGUIglobals'
trainTest : onOK: no visible binding for global variable
  '.affylmGUIglobals'
trainTest : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
trainTest : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
trainTest: possible error in Try(x = exprs(testAffyData)): unused
  argument(s) (x = exprs(testAffyData))
trainTest : onOK: no visible binding for global variable
  'affylmGUIenvironment'
VennDiagram: no visible binding for global variable '.affylmGUIglobals'
VennDiagram : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
VennDiagram : onOK: no visible binding for global variable
  '.affylmGUIglobals'
VennDiagram : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
VennDiagram: no visible binding for global variable
  'affylmGUIenvironment'
VennDiagram : plotFunction: no visible binding for global variable
  'include'
VennDiagram: no visible global function definition for 'tkrplot'
whichKindOfArray: no visible binding for global variable
  'affylmGUIenvironment'
whichKindOfArray: no visible binding for '<<-' assignment to
  'ReturnVal'
whichKindOfArray: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray : onOK: no visible binding for '<<-' assignment to
  'ReturnVal'
whichKindOfArray : onOK: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
whichKindOfArray: no visible binding for global variable 'ReturnVal'
Found possibly global 'T' or 'F' in the following functions:
  .downloadLibs .gettingEG aptFolder AptMidas createGeoTarget
  crosshybFilter deleteLocalData dfMAplot EG2probeset extractAffyids
  filteringTable GOenrichment inspecting.splice.index intronicBg
  IPAlistFilter listFilter masigpro.view metaArrayMerge ML.edesign
  myExpresso NewLimmaFile oneChannelGUI OpenAFile OpenAGeoFile
  OpenExonandTargetsfiles rankProd showTopTable siggenes targetWidget
  templA trainTest VennDiagram whichKindOfArray
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating oneChannelGUI-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating oneChannelGUI-manual.tex ... OK
* checking oneChannelGUI-manual.tex ... OK

oneChannelGUI.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/oneChannelGUI.Rcheck


---------- Making package oneChannelGUI ------------
  adding build stamp to DESCRIPTION
  installing R files
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  installing man source files
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  not zipping data
  installing help
 >>> Building/Updating help pages for package 'oneChannelGUI'
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HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "\Program Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\oneChannelGUI.Rcheck\00_pkg_src\oneChannelGUI\chm\oneChannelGUI.chm

HHC4016: Warning: Cannot open "\Program Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".


The following files were not compiled:
  preparing package oneChannelGUI for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affylmGUI
Loading required package: limma
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: tkWidgets
Loading required package: widgetTools
Loading required package: DynDoc
  adding MD5 sums

* DONE (oneChannelGUI)