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Package 132/233HostnameOS / ArchBUILDCHECKBUILD BIN
matchprobes 1.10.0
Biocore Team c/o BioC user list
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/matchprobes
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: matchprobes
Version: 1.10.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build matchprobes
StartedAt: 2008-04-09 16:03:41 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 16:14:05 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 623.2 seconds
RetCode: 0
Status: OK
PackageFile: matchprobes_1.10.0.tar.gz
PackageFileSize: 7.698 MiB

Command output

* checking for file 'matchprobes/DESCRIPTION' ... OK
* preparing 'matchprobes':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst520428439


---------- Making package matchprobes ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making matchprobes.d from matchprobes.c
making strutils.d from strutils.c
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c matchprobes.c -o matchprobes.o
gcc-sjlj  -std=gnu99  -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c strutils.c -o strutils.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include  -i matchprobes_res.rc -o matchprobes_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o matchprobes.dll matchprobes.def matchprobes.o strutils.o matchprobes_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package matchprobes for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'matchprobes'
     Formats: text html latex example chm 
  basecontent                       text    html    latex   example chm
  combineAffyBatch                  text    html    latex   example chm
  complementSeq                     text    html    latex   example chm
  getProbeDataAffy                  text    html    latex   example chm
  getProbeData_1lq                  text    html    latex   example chm
  longestConsecutive                text    html    latex   example chm
  makeProbePackage                  text    html    latex   example chm
  matchprobes                       text    html    latex   example chm
  print.probetable                  text    html    latex   example chm
  reverseSeq                        text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "es\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\matchprobes\chm\matchprobes.chm



HHC4016: Warning: Cannot open "es\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  adding MD5 sums

* DONE (matchprobes)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'matchprobes_1.10.0.tar.gz'