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Package 123/233HostnameOS / ArchBUILDCHECKBUILD BIN
made4 1.12.1
Aedin Culhane
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/made4
Last Changed Rev: 27740 / Revision: 30966
Last Changed Date: 2007-10-03 18:19:17 -0700 (Wed, 03 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: made4
Version: 1.12.1
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check made4_1.12.1.tar.gz
StartedAt: 2008-04-09 20:07:58 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 20:10:51 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 173.4 seconds
RetCode: 0
Status: OK
CheckDir: made4.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/made4.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'made4/DESCRIPTION' ... OK
* this is package 'made4' version '1.12.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'made4' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getdata: no visible binding for global variable 'intensities'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'bga':
  plot.bga

S3 methods shown with full name in documentation object 'cia':
  plot.cia

S3 methods shown with full name in documentation object 'comparelists':
  print.comparelists

S3 methods shown with full name in documentation object 'ord':
  plot.ord

S3 methods shown with full name in documentation object 'suppl':
  plot.suppl

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating made4-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating made4-manual.tex ... OK
* checking made4-manual.tex ... OK

made4.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/made4.Rcheck


---------- Making package made4 ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
Note: unmatched right brace in 'cia' on or after line 102
Note: unmatched right brace in 'cia.Rd' on or after line 102
Note: unmatched right brace in 'genes' on or after line 40
Note: unmatched right brace in 'genes.Rd' on or after line 40
Note: unmatched right brace in 'jmol3D' on or after line 42
Note: unmatched right brace in 'jmol3D.Rd' on or after line 42
Note: unmatched right brace in 'plotgenes' on or after line 48
Note: unmatched right brace in 'plotgenes.Rd' on or after line 48
 >>> Building/Updating help pages for package 'made4'
     Formats: text html latex example chm 
  NCI60                             text    html    latex   example chm
  array2ade4                        text    html    latex   example chm
  bet.coinertia                     text    html    latex   example chm
  between.graph                     text    html    latex   example chm
  bga                               text    html    latex   example chm
  bga.jackknife                     text    html    latex   example chm
  bga.suppl                         text    html    latex   example chm
  checkfac                          text    html    latex   example chm
  chime3D                           text    html    latex   example chm
  cia                               text    html    latex   example chm
  commonMap                         text    html    latex   example chm
  comparelists                      text    html    latex   example chm
  do3d                              text    html    latex   example chm
  dudi.rwcoa                        text    html    latex   example chm
  forrwcoa                          text    html    latex   example chm
  genes                             text    html    latex   example chm
  genes1d                           text    html    latex   example chm
  getcol                            text    html    latex   example chm
  getdata                           text    html    latex   example chm
  graph1D                           text    html    latex   example chm
  heatplot                          text    html    latex   example chm
  html3D                            text    html    latex   example chm
  jmol3D                            text    html    latex   example chm
  khan                              text    html    latex   example chm
  ord                               text    html    latex   example chm
  overview                          text    html    latex   example chm
  plotarrays                        text    html    latex   example chm
  plotgenes                         text    html    latex   example chm
  pretty.dend                       text    html    latex   example chm
  randomiser                        text    html    latex   example chm
  s.var                             text    html    latex   example chm
  sumstats                          text    html    latex   example chm
  suppl                             text    html    latex   example chm
  topgenes                          text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\made4.Rcheck\00_pkg_src\made4\chm\made4.chm

HHC4016: Warning: Cannot open "gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".


The following files were not compiled:
  preparing package made4 for lazy loading
Loading required package: ade4

Attaching package: 'ade4'


	The following object(s) are masked from package:base :

	 within 

  adding MD5 sums

* DONE (made4)