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Package 51/233HostnameOS / ArchBUILDCHECKBUILD BIN
codelink 1.6.0
Diego Diez
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/codelink
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: codelink
Version: 1.6.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build codelink
StartedAt: 2008-04-09 17:00:19 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 17:01:27 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 68.1 seconds
RetCode: 0
Status: OK
PackageFile: codelink_1.6.0.tar.gz
PackageFileSize: 992.1 KiB

Command output

* checking for file 'codelink/DESCRIPTION' ... OK
* preparing 'codelink':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst140013232


---------- Making package codelink ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package codelink for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: limma
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'codelink'
     Formats: text html latex example chm 
  Codelink-class                    text    html    latex   example chm
  Nondocumented-objects             text    html    latex           chm
  SNR                               text    html    latex   example chm
  arrayNew                          text    html    latex   example chm
  arraySize                         text    html    latex           chm
  as.matrix.Codelink                text    html    latex   example chm
  bkgdCorrect                       text    html    latex   example chm
  codelink.example                  text    html    latex           chm
  createWeights                     text    html    latex   example chm
  cutCV                             text    html    latex   example chm
  decDetect                         text    html    latex   example chm
  dim.Codelink                      text    html    latex   example chm
  fc2Cond                           text    html    latex   example chm
  imageCodelink                     text    html    latex   example chm
  logCodelink                       text    html    latex   example chm
  mergeArray                        text    html    latex   example chm
  na2false                          text    html    latex   example chm
  normalize                         text    html    latex   example chm
  normalize.loess                   text    html    latex   example chm
  plotCV                            text    html    latex   example chm
  plotCorrelation                   text    html    latex   example chm
  plotDensities                     text    html    latex   example chm
  plotMA                            text    html    latex   example chm
  printHead                         text    html    latex   example chm
  readCodelink                      text    html    latex   example chm
  readHeader                        text    html    latex   example chm
  readHeaderXLS                     text    html    latex   example chm
  reportCodelink                    text    html    latex   example chm
  selCV                             text    html    latex   example chm
  writeCodelink                     text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open " NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\codelink\chm\codelink.chm



HHC4016: Warning: Cannot open " NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  adding MD5 sums

* DONE (codelink)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'codelink_1.6.0.tar.gz'