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Package 29/233HostnameOS / ArchBUILDCHECKBUILD BIN
bgafun 1.1.0
Iain Wallace
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/bgafun
Last Changed Rev: 30325 / Revision: 30966
Last Changed Date: 2008-03-02 14:30:55 -0800 (Sun, 02 Mar 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: bgafun
Version: 1.1.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=bgafun.buildbin-libdir bgafun_1.1.0.tar.gz
StartedAt: 2008-04-09 22:50:01 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 22:50:47 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 45.6 seconds
RetCode: 0
Status: OK
PackageFile: bgafun_1.1.0.zip
PackageFileSize: 293.5 KiB

Command output

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/bgafun.buildbin-libdir

Using auto-selected zip options 'bgafun-ZIPDATA=zip bgafun-HELP=ziponly'

---------- Making package bgafun ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  zipping data
  installing help
Note: unmatched right brace in 'add_pseudo_counts' on or after line 9
Note: unmatched right brace in 'add_pseudo_counts.Rd' on or after line 9
Note: unmatched right brace in 'run_between_pca' on or after line 8
Note: unmatched right brace in 'run_between_pca.Rd' on or after line 8
 >>> Building/Updating help pages for package 'bgafun'
     Formats: text html latex example chm 
  Calculate_Row_Weights             text    html    latex   example chm
  Henikoff_weights                  text    html    latex           chm
  LDH                               text    html    latex           chm
  LDH.aap                           text    html    latex           chm
  LDH.aap.ave                       text    html    latex           chm
  LDH.amino                         text    html    latex           chm
  LDH.amino.gapless                 text    html    latex           chm
  LDH.amino.pseudo                  text    html    latex           chm
  LDH.groups                        text    html    latex           chm
  Weight_Amino                      text    html    latex           chm
  add_pseudo_counts                 text    html    latex   example chm
  amino_counts                      text    html    latex           chm
  average_cols_aap                  text    html    latex   example chm
  bgafun                            text    html    latex   example chm
  calculate_pseudo                  text    html    latex           chm
  convertAAP.package                text    html    latex           chm
  convert_aln_AAP                   text    html    latex   example chm
  convert_aln_amino                 text    html    latex   example chm
  convert_amino.package             text    html    latex           chm
  convert_seq_AAP                   text    html    latex           chm
  convert_seq_amino                 text    html    latex           chm
  create_colnames_AAP               text    html    latex           chm
  create_colnames_amino             text    html    latex           chm
  create_probab                     text    html    latex           chm
  create_profile                    text    html    latex           chm
  create_profile_strings            text    html    latex   example chm
  pseudo_counts                     text    html    latex           chm
  remove_gaps                       text    html    latex           chm
  remove_gaps_groups                text    html    latex   example chm
  run_between_pca                   text    html    latex   example chm
  sum_20_aln                        text    html    latex           chm
  sum_20_cols                       text    html    latex           chm
  sum_aln                           text    html    latex           chm
  top_residues_2_groups             text    html    latex   example chm
  zipping help files
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open ";c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.5224\bgafun\chm\bgafun.chm



HHC4016: Warning: Cannot open ";c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  adding MD5 sums

packaged installation of package 'bgafun' as bgafun_1.1.0.zip
* DONE (bgafun)