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Package 20/233HostnameOS / ArchBUILDCHECKBUILD BIN
annotationTools 1.8.0
Alexandre Kuhn
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/annotationTools
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: annotationTools
Version: 1.8.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build annotationTools
StartedAt: 2008-04-09 17:25:05 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 17:26:04 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 58.2 seconds
RetCode: 0
Status: OK
PackageFile: annotationTools_1.8.0.tar.gz
PackageFileSize: 223.4 KiB

Command output

* checking for file 'annotationTools/DESCRIPTION' ... OK
* preparing 'annotationTools':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst91262036


---------- Making package annotationTools ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'annotationTools'
     Formats: text html latex example chm 
  HG-U133_Plus_2_annot_part         text    html    latex           chm
  HG-U133_Plus_2_ortholog_part      text    html    latex           chm
  Mouse430_2_annot_part             text    html    latex           chm
  annot_HGU133A                     text    html    latex           chm
  compactList                       text    html    latex   example chm
  getANNOTATION                     text    html    latex   example chm
  getGENEID                         text    html    latex   example chm
  getGENEONTOLOGY                   text    html    latex   example chm
  getGENESYMBOL                     text    html    latex   example chm
  getGENETITLE                      text    html    latex   example chm
  getHOMOLOG                        text    html    latex   example chm
  getMULTIANNOTATION                text    html    latex   example chm
  getOrthologousProbesets           text    html    latex   example chm
  getPROBESET                       text    html    latex   example chm
  homologene_part                   text    html    latex           chm
  listToCharacterVector             text    html    latex   example chm
  ortho                             text    html    latex           chm
  ps2ps                             text    html    latex   example chm
  table_human                       text    html    latex           chm
  table_mouse                       text    html    latex           chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "metrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\annotationTools\chm\annotationTools.chm



HHC4016: Warning: Cannot open "metrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  adding MD5 sums

* DONE (annotationTools)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'annotationTools_1.8.0.tar.gz'