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Package 18/233HostnameOS / ArchBUILDCHECKBUILD BIN
annotate 1.16.1
Biocore Team c/o BioC user list
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/annotate
Last Changed Rev: 28275 / Revision: 30966
Last Changed Date: 2007-10-27 09:48:40 -0700 (Sat, 27 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: annotate
Version: 1.16.1
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=annotate.buildbin-libdir annotate_1.16.1.tar.gz
StartedAt: 2008-04-09 22:46:38 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 22:47:45 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 66.9 seconds
RetCode: 0
Status: OK
PackageFile: annotate_1.16.1.zip
PackageFileSize: 1.761 MiB

Command output

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/annotate.buildbin-libdir

Using auto-selected zip options 'annotate-ZIPDATA=zip annotate-HELP=ziponly'

---------- Making package annotate ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package annotate for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
  installing man source files
  installing indices
  zipping data
  installing help
 >>> Building/Updating help pages for package 'annotate'
     Formats: text html latex example chm 
  ACCNUMStats                       text    html    latex   example chm
  GO2heatmap                        text    html    latex   example chm
  GOmnplot                          text    html    latex   example chm
  HTMLPage-class                    text    html    latex   example chm
  LL2homology                       text    html    latex   example chm
  PMIDAmat                          text    html    latex   example chm
  PWAmat                            text    html    latex   example chm
  UniGeneQuery                      text    html    latex   example chm
  accessionToUID                    text    html    latex   example chm
  annPkgName                        text    html    latex   example chm
  aqListGOIDs                       text    html    latex   example chm
  buildChromLocation                text    html    latex   example chm
  buildPubMedAbst                   text    html    latex   example chm
  chrCats                           text    html    latex   example chm
  chromLocation-class               text    html    latex   example chm
  compatibleVersions                text    html    latex   example chm
  dropECode                         text    html    latex   example chm
  filterGOByOntology                text    html    latex   example chm
  findNeighbors                     text    html    latex   example chm
  genbank                           text    html    latex   example chm
  genelocator                       text    html    latex   example chm
  getAnnMap                         text    html    latex   example chm
  getEvidence                       text    html    latex   example chm
  getGOTerm                         text    html    latex   example chm
  getOntology                       text    html    latex   example chm
  getPMInfo                         text    html    latex   example chm
  getSYMBOL                         text    html    latex   example chm
  getSeq4Acc                        text    html    latex   example chm
  getTDRows                         text    html    latex           chm
  hasGOannote                       text    html    latex   example chm
  hgByChroms                        text    html    latex   example chm
  hgCLengths                        text    html    latex   example chm
  hgu95AProbLocs                    text    html    latex           chm
  hgu95Achroloc                     text    html    latex   example chm
  hgu95Achrom                       text    html    latex   example chm
  hgu95All                          text    html    latex   example chm
  hgu95Asym                         text    html    latex   example chm
  homoData-class                    text    html    latex   example chm
  htmlpage                          text    html    latex   example chm
  locuslinkById                     text    html    latex   example chm
  locuslinkQuery                    text    html    latex   example chm
  makeAnchor                        text    html    latex   example chm
  mapOrgs                           text    html    latex           chm
  neighborGeneFinder                text    html    latex   example chm
  p2LL                              text    html    latex   example chm
  pm.abstGrep                       text    html    latex   example chm
  pm.getabst                        text    html    latex   example chm
  pm.titles                         text    html    latex   example chm
  pmAbst2HTML                       text    html    latex   example chm
  pmid2MIAME                        text    html    latex   example chm
  pmidQuery                         text    html    latex   example chm
  probesByLL                        text    html    latex   example chm
  pubMedAbst-class                  text    html    latex   example chm
  pubmed                            text    html    latex   example chm
  readGEOAnn                        text    html    latex   example chm
  serializeEnv                      text    html    latex   example chm
  usedChromGenes                    text    html    latex   example chm
  zipping help files
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "rogram Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.4912\annotate\chm\annotate.chm



HHC4016: Warning: Cannot open "rogram Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  adding MD5 sums

packaged installation of package 'annotate' as annotate_1.16.1.zip
* DONE (annotate)