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Package 4/233HostnameOS / ArchBUILDCHECKBUILD BIN
adSplit 1.8.0
Claudio Lottaz
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/adSplit
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: adSplit
Version: 1.8.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build adSplit
StartedAt: 2008-04-09 17:03:53 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 17:06:09 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 136.6 seconds
RetCode: 0
Status: OK
PackageFile: adSplit_1.8.0.tar.gz
PackageFileSize: 201.7 KiB

Command output

* checking for file 'adSplit/DESCRIPTION' ... OK
* preparing 'adSplit':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst380424179


---------- Making package adSplit ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making adSplit.d from adSplit.cpp
g++-sjlj   -Id:/biocbld/bbs-2.1-bioc/R/include     -O2 -Wall  -c adSplit.cpp -o adSplit.o
adSplit.cpp: In function 'double tscore(double*, int, int, split&, isis_pars&)':
adSplit.cpp:253: warning: deprecated conversion from string constant to 'char*'
adSplit.cpp: In function 'void isis(char**, double*, int*, int*, int*, int*, int*, double*, int*)':
adSplit.cpp:466: warning: deprecated conversion from string constant to 'char*'
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include  -i adSplit_res.rc -o adSplit_res.o
g++-sjlj   -shared -s  -o adSplit.dll adSplit.def adSplit.o adSplit_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package adSplit for lazy loading
Loading required package: cluster
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: GO
Loading required package: KEGG
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'adSplit'
     Formats: text html latex example chm 
  adSplit-internal                  text    html    latex           chm
  adSplit                           text    html    latex   example chm
  diana2means                       text    html    latex   example chm
  drawRandomPS                      text    html    latex   example chm
  golubKEGGSplits                   text    html    latex   example chm
  hist.splitSet                     text    html    latex   example chm
  image.splitSet                    text    html    latex   example chm
  makeEID2PROBESenv                 text    html    latex   example chm
  print.split                       text    html    latex           chm
  print.splitSet                    text    html    latex   example chm
  randomDiana2means                 text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "fx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\adSplit\chm\adSplit.chm



HHC4016: Warning: Cannot open "fx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  adding MD5 sums

* DONE (adSplit)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'adSplit_1.8.0.tar.gz'