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Package 115/233HostnameOS / ArchBUILDCHECKBUILD BIN
LMGene 1.8.0
John Tillinghast
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/LMGene
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: LMGene
Version: 1.8.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check LMGene_1.8.0.tar.gz
StartedAt: 2008-04-09 20:00:04 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 20:07:47 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 462.4 seconds
RetCode: 0
Status: OK
CheckDir: LMGene.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/LMGene.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'LMGene/DESCRIPTION' ... OK
* this is package 'LMGene' version '1.8.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'LMGene' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating LMGene-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating LMGene-manual.tex ... OK
* checking LMGene-manual.tex ... OK

LMGene.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/LMGene.Rcheck


---------- Making package LMGene ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'LMGene'
     Formats: text html latex example chm 
  GetLMObj                          text    html    latex   example chm
  LMGene                            text    html    latex   example chm
  genediff                          text    html    latex   example chm
  glog                              text    html    latex   example chm
  jggrad2                           text    html    latex   example chm
  jglog                             text    html    latex   example chm
  lnorm                             text    html    latex   example chm
  lnormeS                           text    html    latex   example chm
  mlm2lm                            text    html    latex   example chm
  msa                               text    html    latex   example chm
  msecalc                           text    html    latex   example chm
  msecalcmult                       text    html    latex   example chm
  neweS                             text    html    latex   example chm
  norm                              text    html    latex   example chm
  psmeans                           text    html    latex   example chm
  pvadjust                          text    html    latex   example chm
  rowaov                            text    html    latex   example chm
  rowlist                           text    html    latex   example chm
  sample.eS                         text    html    latex   example chm
  sample.ind                        text    html    latex   example chm
  sample.mat                        text    html    latex   example chm
  tranest                           text    html    latex   example chm
  tranest2                          text    html    latex   example chm
  tranestmult                       text    html    latex   example chm
  transeS                           text    html    latex   example chm
  vlist                             text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "s\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\LMGene.Rcheck\00_pkg_src\LMGene\chm\LMGene.chm

HHC4016: Warning: Cannot open "s\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".


The following files were not compiled:
  adding MD5 sums

* DONE (LMGene)