Back to the "Multiple platform build/check report" A  B  C  D  E  F [G] H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 87/233HostnameOS / ArchBUILDCHECKBUILD BIN
GEOquery 2.2.1
Sean Davis
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/GEOquery
Last Changed Rev: 29374 / Revision: 30966
Last Changed Date: 2008-01-03 13:23:38 -0800 (Thu, 03 Jan 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: GEOquery
Version: 2.2.1
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check GEOquery_2.2.1.tar.gz
StartedAt: 2008-04-09 19:31:50 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 19:34:53 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 182.9 seconds
RetCode: 0
Status: OK
CheckDir: GEOquery.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/GEOquery.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'GEOquery/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GEOquery' version '2.2.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GEOquery' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating GEOquery-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GEOquery-manual.tex ... OK
* checking GEOquery-manual.tex ... OK

GEOquery.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/GEOquery.Rcheck


---------- Making package GEOquery ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'GEOquery'
     Formats: text html latex example chm 
  GDS-class                         text    html    latex           chm
  GDS2MA                            text    html    latex   example chm
  GEOData-class                     text    html    latex           chm
  GEODataTable-class                text    html    latex           chm
  GPL-class                         text    html    latex           chm
  GSE-class                         text    html    latex           chm
  GSM-class                         text    html    latex           chm
  dataTable                         text    html    latex           chm
  getGEO                            text    html    latex   example chm
  getGEOfile                        text    html    latex   example chm
  gunzip                            text    html    latex           chm
  parseGEO                          text    html    latex           chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "s\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\GEOquery.Rcheck\00_pkg_src\GEOquery\chm\GEOquery.chm

HHC4016: Warning: Cannot open "s\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".


The following files were not compiled:
  adding MD5 sums

* DONE (GEOquery)