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Package 17/233HostnameOS / ArchBUILDCHECKBUILD BIN
AnnBuilder 1.16.0
J. Zhang
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/AnnBuilder
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: AnnBuilder
Version: 1.16.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build AnnBuilder
StartedAt: 2008-04-09 16:07:39 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 16:09:45 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 125.8 seconds
RetCode: 0
Status: OK
PackageFile: AnnBuilder_1.16.0.tar.gz
PackageFileSize: 467.9 KiB

Command output

* checking for file 'AnnBuilder/DESCRIPTION' ... OK
* preparing 'AnnBuilder':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst65209970


---------- Making package AnnBuilder ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package AnnBuilder for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: XML
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'AnnBuilder'
     Formats: text html latex example chm 
  ABPkgBuilder                      text    html    latex   example chm
  EG-class                          text    html    latex           chm
  GEO-class                         text    html    latex   example chm
  GO-class                          text    html    latex           chm
  GOPkgBuilder                      text    html    latex   example chm
  GOXMLParser                       text    html    latex           chm
  GP-class                          text    html    latex   example chm
  HG-class                          text    html    latex           chm
  IPI-class                         text    html    latex   example chm
  KEGG-class                        text    html    latex   example chm
  KEGGPkgBuilder                    text    html    latex           chm
  LL-class                          text    html    latex   example chm
  MeSHParser                        text    html    latex           chm
  PFAM-class                        text    html    latex   example chm
  SPPkgBuilder                      text    html    latex           chm
  UG-class                          text    html    latex   example chm
  YEAST-class                       text    html    latex   example chm
  YG-class                          text    html    latex   example chm
  addNamespace                      text    html    latex   example chm
  athPkgBuilder                     text    html    latex   example chm
  cMapPathBuilder                   text    html    latex   example chm
  chrLocPkgBuilder                  text    html    latex   example chm
  cleanSrcObjs                      text    html    latex           chm
  cols2Env                          text    html    latex   example chm
  descriptionInfo                   text    html    latex   example chm
  downloadSourceData                text    html    latex           chm
  fileMuncher                       text    html    latex   example chm
  fileToXML                         text    html    latex   example chm
  getChroLocation                   text    html    latex   example chm
  getDPStats                        text    html    latex   example chm
  getKEGGIDNName                    text    html    latex   example chm
  getPubDataGo                      text    html    latex           chm
  getSrcBuilt                       text    html    latex   example chm
  getSrcUrl                         text    html    latex           chm
  getUGShortName                    text    html    latex   example chm
  getYeastData                      text    html    latex   example chm
  homoPkgBuilder                    text    html    latex           chm
  loadFromUrl                       text    html    latex   example chm
  makeLLDB                          text    html    latex           chm
  makeSrcInfo                       text    html    latex   example chm
  map2LL                            text    html    latex   example chm
  pfamBuilder                       text    html    latex   example chm
  print.ABQCList                    text    html    latex   example chm
  pubDataURLs                       text    html    latex   example chm
  pubRepo-class                     text    html    latex   example chm
  queryGEO                          text    html    latex   example chm
  readSourceUrlConfig               text    html    latex           chm
  resolveMaps                       text    html    latex   example chm
  sourceURLs                        text    html    latex   example chm
  unifyMappings                     text    html    latex   example chm
  wget                              text    html    latex           chm
  writeChrLength                    text    html    latex   example chm
  writeHomoXMLData                  text    html    latex           chm
  writeManPage                      text    html    latex   example chm
  writeSourceUrlConfig              text    html    latex           chm
  writeXMLHeader                    text    html    latex   example chm
  yeastAnn                          text    html    latex   example chm
  yeastPkgBuilder                   text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "ource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\AnnBuilder\chm\AnnBuilder.chm



HHC4016: Warning: Cannot open "ource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  adding MD5 sums

* DONE (AnnBuilder)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'AnnBuilder_1.16.0.tar.gz'