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Package 220/233HostnameOS / ArchBUILDCHECKBUILD BIN
tilingArray 1.16.0
W. Huber
Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/tilingArray
Last Changed Rev: 27709 / Revision: 30807
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: tilingArray
Version: 1.16.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=tilingArray.buildbin-libdir tilingArray_1.16.0.tar.gz
StartedAt: 2008-04-02 23:46:20 -0700 (Wed, 02 Apr 2008)
EndedAt: 2008-04-02 23:47:25 -0700 (Wed, 02 Apr 2008)
EllapsedTime: 64.4 seconds
RetCode: 0
Status: OK
PackageFile: tilingArray_1.16.0.zip
PackageFileSize: 2.162 MiB

Command output

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/tilingArray.buildbin-libdir

Using auto-selected zip options ' tilingArray-HELP=ziponly'

---------- Making package tilingArray ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making findsegments.d from findsegments.c
making sampleStep.d from sampleStep.c
gcc-sjlj  -std=gnu99  -ID:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c findsegments.c -o findsegments.o
gcc-sjlj  -std=gnu99  -ID:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c sampleStep.c -o sampleStep.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I D:/biocbld/bbs-2.1-bioc/R/include  -i tilingArray_res.rc -o tilingArray_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o tilingArray.dll tilingArray.def findsegments.o sampleStep.o tilingArray_res.o  -LD:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  preparing package tilingArray for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: strucchange
Loading required package: zoo
Loading required package: sandwich
Loading required package: vsn
Loading required package: limma
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: pixmap
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'tilingArray'
     Formats: text html latex example chm 
  PMindex                           text    html    latex   example chm
  breakpointsPretend                text    html    latex           chm
  class-segmentation                text    html    latex   example chm
  comparisonPlot                    text    html    latex   example chm
  costMatrix                        text    html    latex   example chm
  findsegments                      text    html    latex   example chm
  normalizeByReference              text    html    latex   example chm
  otherStrand                       text    html    latex   example chm
  plotAlongChrom                    text    html    latex   example chm
  plotAlongChromLegend              text    html    latex   example chm
  plotFeatures                      text    html    latex   example chm
  plotSegmentationDots              text    html    latex   example chm
  plotSegmentationHeatmap           text    html    latex   example chm
  plotpenLL                         text    html    latex   example chm
  posMin                            text    html    latex   example chm
  qcPlots                           text    html    latex   example chm
  readCel2eSet                      text    html    latex   example chm
  sampleStep                        text    html    latex   example chm
  segChrom                          text    html    latex   example chm
  segment                           text    html    latex   example chm
  tilingArray-package               text    html    latex           chm
  zipping help files
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "el\DMIX;c:\Program Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.3784\tilingArray\chm\tilingArray.chm



HHC4016: Warning: Cannot open "el\DMIX;c:\Program Files\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  adding MD5 sums

packaged installation of package 'tilingArray' as tilingArray_1.16.0.zip
* DONE (tilingArray)