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Package 153/233HostnameOS / ArchBUILDCHECKBUILD BIN
pamr 1.36.0
Rob Tibshirani
Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/pamr
Last Changed Rev: 27709 / Revision: 30807
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: pamr
Version: 1.36.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=pamr.buildbin-libdir pamr_1.36.0.tar.gz
StartedAt: 2008-04-02 23:28:12 -0700 (Wed, 02 Apr 2008)
EndedAt: 2008-04-02 23:29:04 -0700 (Wed, 02 Apr 2008)
EllapsedTime: 51.4 seconds
RetCode: 0
Status: OK
PackageFile: pamr_1.36.0.zip
PackageFileSize: 1.305 MiB

Command output

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/pamr.buildbin-libdir

Using auto-selected zip options 'pamr-ZIPDATA=zip pamr-HELP=ziponly'

---------- Making package pamr ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making cox_func.d from cox_func.c
gcc-sjlj  -std=gnu99  -ID:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c cox_func.c -o cox_func.o
gfortran-sjlj   -O3  -c knnimpute.f -o knnimpute.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I D:/biocbld/bbs-2.1-bioc/R/include  -i pamr_res.rc -o pamr_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o pamr.dll pamr.def cox_func.o knnimpute.o pamr_res.o  -LD:/biocbld/bbs-2.1-bioc/R/bin   -lgfortran -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  zipping data
  installing help
Note: unmatched right brace in 'pamr.confusion.survival' on or after line 24
Note: unmatched right brace in 'pamr.confusion.survival.Rd' on or after line 24
Note: unmatched right brace in 'pamr.listgenes' on or after line 8
Note: unmatched right brace in 'pamr.listgenes.Rd' on or after line 8
Note: unmatched right brace in 'pamr.plotcen' on or after line 7
Note: unmatched right brace in 'pamr.plotcen.Rd' on or after line 7
Note: unmatched right brace in 'pamr.predict' on or after line 8
Note: unmatched right brace in 'pamr.predict.Rd' on or after line 8
Note: unmatched right brace in 'pamr.predictmany' on or after line 8
Note: unmatched right brace in 'pamr.predictmany.Rd' on or after line 8
 >>> Building/Updating help pages for package 'pamr'
     Formats: text html latex example chm 
  khan                              text    html    latex           chm
  pamr.adaptthresh                  text    html    latex   example chm
  pamr.batchadjust                  text    html    latex   example chm
  pamr.confusion                    text    html    latex   example chm
  pamr.confusion.survival           text    html    latex   example chm
  pamr.cv                           text    html    latex   example chm
  pamr.decorrelate                  text    html    latex   example chm
  pamr.fdr                          text    html    latex   example chm
  pamr.from.excel                   text    html    latex           chm
  pamr.geneplot                     text    html    latex   example chm
  pamr.indeterminate                text    html    latex   example chm
  pamr.internal                     text    html    latex           chm
  pamr.knnimpute                    text    html    latex           chm
  pamr.listgenes                    text    html    latex   example chm
  pamr.makeclasses                  text    html    latex   example chm
  pamr.menu                         text    html    latex   example chm
  pamr.plotcen                      text    html    latex   example chm
  pamr.plotcv                       text    html    latex   example chm
  pamr.plotcvprob                   text    html    latex   example chm
  pamr.plotfdr                      text    html    latex   example chm
  pamr.plotstrata                   text    html    latex   example chm
  pamr.plotsurvival                 text    html    latex   example chm
  pamr.predict                      text    html    latex   example chm
  pamr.predictmany                  text    html    latex   example chm
  pamr.surv.to.class2               text    html    latex   example chm
  pamr.test.errors.surv.compute     text    html    latex   example chm
  pamr.to.excel                     text    html    latex           chm
  pamr.train                        text    html    latex   example chm
  zipping help files
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "metrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.5856\pamr\chm\pamr.chm



HHC4016: Warning: Cannot open "metrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  adding MD5 sums

packaged installation of package 'pamr' as pamr_1.36.0.zip
* DONE (pamr)