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Package 125/233HostnameOS / ArchBUILDCHECKBUILD BIN
makecdfenv 1.16.0
James W. MacDonald
Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/makecdfenv
Last Changed Rev: 27709 / Revision: 30807
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: makecdfenv
Version: 1.16.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build makecdfenv
StartedAt: 2008-04-02 16:00:32 -0700 (Wed, 02 Apr 2008)
EndedAt: 2008-04-02 16:01:29 -0700 (Wed, 02 Apr 2008)
EllapsedTime: 57.0 seconds
RetCode: 0
Status: OK
PackageFile: makecdfenv_1.16.0.tar.gz
PackageFileSize: 3.086 MiB

Command output

* checking for file 'makecdfenv/DESCRIPTION' ... OK
* preparing 'makecdfenv':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst456852090


---------- Making package makecdfenv ------------

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************

  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making read_cdffile.d from read_cdffile.c
gcc-sjlj  -std=gnu99 -Id:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -DHAVE_ZLIB -Id:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c read_cdffile.c -o read_cdffile.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include  -i makecdfenv_res.rc -o makecdfenv_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o makecdfenv.dll makecdfenv.def read_cdffile.o makecdfenv_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin -Ld:/biocbld/bbs-2.1-bioc/R/src/extra/zlib -lz   -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  preparing package makecdfenv for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'makecdfenv'
     Formats: text html latex example chm 
  Cdf-class                         text    html    latex           chm
  getInfoInAffyFile                 text    html    latex           chm
  make.cdf.env                      text    html    latex   example chm
  make.cdf.package                  text    html    latex   example chm
  pmormm                            text    html    latex           chm
  read.cdffile                      text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "ymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\makecdfenv\chm\makecdfenv.chm



HHC4016: Warning: Cannot open "ymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  adding MD5 sums

* DONE (makecdfenv)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'makecdfenv_1.16.0.tar.gz'