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Package 53/233HostnameOS / ArchBUILDCHECKBUILD BIN
copa 1.6.0
James W. MacDonald
Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/copa
Last Changed Rev: 27709 / Revision: 30807
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: copa
Version: 1.6.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=copa.buildbin-libdir copa_1.6.0.tar.gz
StartedAt: 2008-04-02 23:00:53 -0700 (Wed, 02 Apr 2008)
EndedAt: 2008-04-02 23:01:43 -0700 (Wed, 02 Apr 2008)
EllapsedTime: 49.8 seconds
RetCode: 0
Status: OK
PackageFile: copa_1.6.0.zip
PackageFileSize: 142.6 KiB

Command output

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/copa.buildbin-libdir

Using auto-selected zip options ''

---------- Making package copa ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making copa.d from copa.c
gcc-sjlj  -std=gnu99  -ID:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c copa.c -o copa.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I D:/biocbld/bbs-2.1-bioc/R/include  -i copa_res.rc -o copa_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o copa.dll copa.def copa.o copa_res.o  -LD:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  preparing package copa for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'copa'
     Formats: text html latex example chm 
  copa                              text    html    latex   example chm
  copa.package                      text    html    latex           chm
  copaFilter                        text    html    latex           chm
  copaPerm                          text    html    latex           chm
  copaTable                         text    html    latex   example chm
  getans                            text    html    latex           chm
  pSum                              text    html    latex           chm
  perm.mat                          text    html    latex           chm
  plotCopa                          text    html    latex   example chm
  scatterPlotCopa                   text    html    latex   example chm
  summaryCopa                       text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.4528\copa\chm\copa.chm



HHC4016: Warning: Cannot open "c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  adding MD5 sums

packaged installation of package 'copa' as copa_1.6.0.zip
* DONE (copa)