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Package 47/233HostnameOS / ArchBUILDCHECKBUILD BIN
cghMCR 1.8.0
J. Zhang
Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/cghMCR
Last Changed Rev: 27709 / Revision: 30807
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: cghMCR
Version: 1.8.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build cghMCR
StartedAt: 2008-04-02 17:08:08 -0700 (Wed, 02 Apr 2008)
EndedAt: 2008-04-02 17:09:10 -0700 (Wed, 02 Apr 2008)
EllapsedTime: 62.1 seconds
RetCode: 0
Status: OK
PackageFile: cghMCR_1.8.0.tar.gz
PackageFileSize: 410.1 KiB

Command output

* checking for file 'cghMCR/DESCRIPTION' ... OK
* preparing 'cghMCR':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst571279855


---------- Making package cghMCR ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package cghMCR for lazy loading
Loading required package: DNAcopy
Loading required package: marray
Loading required package: limma
Loading required package: arrayQuality
Loading required package: convert
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: hexbin
Loading required package: grid
Loading required package: lattice
Loading required package: gridBase
Loading required package: RColorBrewer
Warning in namespaceImportFrom(self, asNamespace(ns)) :
  replacing previous import: summary
Creating a new generic function for "print" in "cghMCR"
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'cghMCR'
     Formats: text html latex example chm 
  cghMCR-class                      text    html    latex   example chm
  cghMCR                            text    html    latex   example chm
  mergeMCRProbes                    text    html    latex   example chm
  plot.DNAcopy                      text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.

HHC4016: Warning: Cannot open "gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".

Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.1-bioc\meat\cghMCR\chm\cghMCR.chm



HHC4016: Warning: Cannot open "gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".





The following files were not compiled:

  adding MD5 sums

* DONE (cghMCR)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'cghMCR_1.8.0.tar.gz'