bgx 1.2.2
Ernest Turro
| Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/bgx | | Last Changed Rev: 29287 / Revision: 30807 | | Last Changed Date: 2007-12-20 14:53:35 -0800 (Thu, 20 Dec 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/bgx.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'bgx/DESCRIPTION' ... OK
* this is package 'bgx' version '1.2.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'bgx' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating bgx-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating bgx-manual.tex ... OK
* checking bgx-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/bgx.Rcheck
---------- Making package bgx ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making qnorm.d from qnorm.c
making bgx.d from bgx.cc
making bgx_frontend.d from bgx_frontend.cc
making rundir.d from rundir.cc
making sokal.d from sokal.cc
gcc-sjlj -std=gnu99 -I ../boostIncl -Id:/biocbld/bbs-2.1-bioc/R/include -DUSING_R -march=i486 -ffast-math -O3 -std=c99 -O3 -Wall -c qnorm.c -o qnorm.o
g++-sjlj -I ../boostIncl -Id:/biocbld/bbs-2.1-bioc/R/include -DUSING_R -march=i486 -ffast-math -O3 -O2 -Wall -c bgx.cc -o bgx.o
g++-sjlj -I ../boostIncl -Id:/biocbld/bbs-2.1-bioc/R/include -DUSING_R -march=i486 -ffast-math -O3 -O2 -Wall -c bgx_frontend.cc -o bgx_frontend.o
g++-sjlj -I ../boostIncl -Id:/biocbld/bbs-2.1-bioc/R/include -DUSING_R -march=i486 -ffast-math -O3 -O2 -Wall -c rundir.cc -o rundir.o
g++-sjlj -I ../boostIncl -Id:/biocbld/bbs-2.1-bioc/R/include -DUSING_R -march=i486 -ffast-math -O3 -O2 -Wall -c sokal.cc -o sokal.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.1-bioc/R/include -i bgx_res.rc -o bgx_res.o
g++-sjlj -shared -s -o bgx.dll bgx.def qnorm.o bgx.o bgx_frontend.o rundir.o sokal.o bgx_res.o -Ld:/biocbld/bbs-2.1-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'bgx'
Formats: text html latex example chm
analysis.bgx text html latex example chm
bgx text html latex example chm
mcmc.bgx text html latex example chm
readOutput.bgx text html latex example chm
saveAffinityPlot.bgx text html latex example chm
setupVars.bgx text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "am Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\bgx.Rcheck\00_pkg_src\bgx\chm\bgx.chm
HHC4016: Warning: Cannot open "am Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
preparing package bgx for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: gcrma
Loading required package: matchprobes
Loading required package: splines
adding MD5 sums
* DONE (bgx)