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Package 202/233HostnameOS / ArchBUILDCHECKBUILD BIN
SemSim 1.4.0
Xiang Guo
Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/SemSim
Last Changed Rev: 27709 / Revision: 30807
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: SemSim
Version: 1.4.0
Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check SemSim_1.4.0.tar.gz
StartedAt: 2008-04-02 21:59:51 -0700 (Wed, 02 Apr 2008)
EndedAt: 2008-04-02 22:15:22 -0700 (Wed, 02 Apr 2008)
EllapsedTime: 931.4 seconds
RetCode: 0
Status: OK
CheckDir: SemSim.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/SemSim.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'SemSim/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SemSim' version '1.4.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SemSim' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Found possibly global 'T' or 'F' in the following function:
  mtermSim
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating SemSim-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating SemSim-manual.tex ... OK
* checking SemSim-manual.tex ... OK

SemSim.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.1-bioc/meat/SemSim.Rcheck


---------- Making package SemSim ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'SemSim'
     Formats: text html latex example chm 
  GOCount                           text    html    latex           chm
  Schreiber                         text    html    latex   example chm
  SemSim-internal                   text    html    latex           chm
  SemSim-package                    text    html    latex           chm
  geneSim                           text    html    latex   example chm
  mgeneSim                          text    html    latex   example chm
  mtermSim                          text    html    latex   example chm
  termSim                           text    html    latex   example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.1-bioc\meat\SemSim.Rcheck\00_pkg_src\SemSim\chm\SemSim.chm

HHC4016: Warning: Cannot open "NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".


The following files were not compiled:
  adding MD5 sums

* DONE (SemSim)