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Package 176/233HostnameOS / ArchBUILDCHECKBUILD BIN
RBGL 1.14.0
Li Long
Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/RBGL
Last Changed Rev: 27709 / Revision: 30807
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] WARNINGS  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: RBGL
Version: 1.14.0
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build RBGL
StartedAt: 2008-04-02 15:32:27 -0700 (Wed, 02 Apr 2008)
EndedAt: 2008-04-02 15:34:41 -0700 (Wed, 02 Apr 2008)
EllapsedTime: 133.4 seconds
RetCode: 0
Status: OK
PackageFile: RBGL_1.14.0.tar.gz
PackageFileSize: 2.308 MiB

Command output

* checking for file 'RBGL/DESCRIPTION' ... OK
* preparing 'RBGL':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst460426907


---------- Making package RBGL ------------
untarring boost include tree...
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making bbc.d from bbc.cpp
making cliques.d from cliques.cpp
making clusteringCoef.d from clusteringCoef.cpp
making hcs.d from hcs.cpp
making incrConnComp.d from incrConnComp.cpp
making interfaces.d from interfaces.cpp
making layout.d from layout.cpp
making minST.d from minST.cpp
making mincut.d from mincut.cpp
making ordering.d from ordering.cpp
making shortestPath.d from shortestPath.cpp
making sna.d from sna.cpp
making transitive_closure.d from transitive_closure.cpp
making wavefront.d from wavefront.cpp
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include   -IboostIncl   -O2 -Wall  -c bbc.cpp -o bbc.o
boostIncl/boost/graph/dijkstra_shortest_paths.hpp: In function 'void boost::detail::dijkstra_dispatch2(const VertexListGraph&, typename boost::graph_traits<G>::vertex_descriptor, DistanceMap, WeightMap, IndexMap, const Params&, ColorMap) [with VertexListGraph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, WeightMap = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, IndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, Params = boost::bgl_named_params<boost::detail::graph::brandes_dijkstra_visitor<const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int, std::allocator<unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, unsigned int, unsigned int&> >, boost::graph_visitor_t, boost::bgl_named_params<boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, boost::vertex_distance_t, boost::bgl_named_params<boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, boost::vertex_index_t, boost::bgl_named_params<boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::edge_weight_t, boost::no_property> > > >, ColorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::default_color_type*, std::vector<boost::default_color_type, std::allocator<boost::default_color_type> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, boost::default_color_type, boost::default_color_type&>]':
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:80: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::detail::graph::brandes_dijkstra_visitor<const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int, std::allocator<unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, unsigned int, unsigned int&> >, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int> >, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::dummy_property_map, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, boost::closed_plus<double>, std::less<double> >::m_decreased' is used uninitialized in this function
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::detail::graph::brandes_dijkstra_visitor<const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator<unsigned int*, std::vector<unsigned int, std::allocator<unsigned int> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, unsigned int, unsigned int&> >, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int> >, boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_centrality_t, double, boost::no_property> >, boost::edge_weight_t>, boost::dummy_property_map, boost::iterator_property_map<__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<boost::vertex_centrality_t, double, boost::no_property> >, unsigned int>, double, double&>, boost::closed_plus<double>, std::less<double> >::m_decreased' was declared here
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include   -IboostIncl   -O2 -Wall  -c cliques.cpp -o cliques.o
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include   -IboostIncl   -O2 -Wall  -c clusteringCoef.cpp -o clusteringCoef.o
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include   -IboostIncl   -O2 -Wall  -c hcs.cpp -o hcs.o
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = const R_adjacency_list<boost::undirectedS, double>, OutputIterator = std::back_insert_iterator<std::vector<unsigned int, std::allocator<unsigned int> > >]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
boostIncl/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include   -IboostIncl   -O2 -Wall  -c incrConnComp.cpp -o incrConnComp.o
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include   -IboostIncl   -O2 -Wall  -c interfaces.cpp -o interfaces.o
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits<G>::degree_size_type boost::edge_connectivity(VertexListGraph&, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, unsigned int> > > >]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
boostIncl/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include   -IboostIncl   -O2 -Wall  -c layout.cpp -o layout.o
boostIncl/boost/graph/fruchterman_reingold.hpp: In function 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim, AttractiveForce, RepulsiveForce, ForcePairs, Cooling, DisplacementMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, PositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::simple_point<double>*, std::vector<boost::simple_point<double>, std::allocator<boost::simple_point<double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, unsigned int>, boost::simple_point<double>, boost::simple_point<double>&>, Dim = double, AttractiveForce = boost::square_distance_attractive_force, RepulsiveForce = boost::square_distance_repulsive_force, ForcePairs = boost::grid_force_pairs<double, boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::simple_point<double>*, std::vector<boost::simple_point<double>, std::allocator<boost::simple_point<double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, unsigned int>, boost::simple_point<double>, boost::simple_point<double>&> >, Cooling = boost::linear_cooling<double>, DisplacementMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::simple_point<double>*, std::vector<boost::simple_point<double>, std::allocator<boost::simple_point<double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, unsigned int>, boost::simple_point<double>, boost::simple_point<double>&>]':
boostIncl/boost/graph/fruchterman_reingold.hpp:366:   instantiated from 'static void boost::detail::fr_force_directed_layout<boost::detail::error_property_not_found>::run(const Graph&, PositionMap, Dim, Dim, AttractiveForce, RepulsiveForce, ForcePairs, Cooling, boost::detail::error_property_not_found, const boost::bgl_named_params<Param, Tag, Rest>&) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, PositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::simple_point<double>*, std::vector<boost::simple_point<double>, std::allocator<boost::simple_point<double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, unsigned int>, boost::simple_point<double>, boost::simple_point<double>&>, Dim = double, AttractiveForce = boost::square_distance_attractive_force, RepulsiveForce = boost::square_distance_repulsive_force, ForcePairs = boost::grid_force_pairs<double, boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::simple_point<double>*, std::vector<boost::simple_point<double>, std::allocator<boost::simple_point<double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, unsigned int>, boost::simple_point<double>, boost::simple_point<double>&> >, Cooling = boost::linear_cooling<double>, Param = boost::square_distance_attractive_force, Tag = boost::attractive_force_t, Rest = boost::no_property]'
boostIncl/boost/graph/fruchterman_reingold.hpp:392:   instantiated from 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim, const boost::bgl_named_params<P, T, R>&) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, PositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::simple_point<double>*, std::vector<boost::simple_point<double>, std::allocator<boost::simple_point<double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, unsigned int>, boost::simple_point<double>, boost::simple_point<double>&>, Dim = double, Param = boost::square_distance_attractive_force, Tag = boost::attractive_force_t, Rest = boost::no_property]'
boostIncl/boost/graph/fruchterman_reingold.hpp:413:   instantiated from 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim) [with Graph = IndexGraph, PositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<boost::simple_point<double>*, std::vector<boost::simple_point<double>, std::allocator<boost::simple_point<double> > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, unsigned int>, boost::simple_point<double>, boost::simple_point<double>&>, Dim = double]'
layout.cpp:187:   instantiated from here
boostIncl/boost/graph/fruchterman_reingold.hpp:312: warning: suggest parentheses around assignment used as truth value
c:\rtools\mingw\bin\../lib/gcc/mingw32/4.2.1-sjlj/include/c++/ext/new_allocator.h: In function 'std::pair<typename Config::edge_descriptor, bool> boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, boost::vec_adj_list_impl<G, C, B>&) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, Config = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config, Base = boost::undirected_graph_helper<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>::config>]':
c:\rtools\mingw\bin\../lib/gcc/mingw32/4.2.1-sjlj/include/c++/ext/new_allocator.h:107: warning: 'p.boost::property<boost::edge_weight_t, double, boost::no_property>::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::no_property>::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'std::pair<typename Config::edge_descriptor, bool> boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, boost::vec_adj_list_impl<G, C, B>&) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, Config = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config, Base = boost::directed_graph_helper<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config>]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::<anonymous>.boost::property<boost::edge_weight2_t, double, boost::no_property>::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::<anonymous>.boost::property<boost::edge_weight2_t, double, boost::no_property>::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, DistanceZero) [with VertexAndEdgeListGraph = const boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::no_property, boost::listS>, DistanceMatrix = __gnu_cxx::__normal_iterator<std::vector<double, std::allocator<double> >*, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > >, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::property<vertex_position_t, boost::simple_point<double>, boost::no_property> >, unsigned int>, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, DistanceZero = double]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::<anonymous>.boost::property<boost::edge_weight2_t, double, boost::no_property>::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::<anonymous>.boost::property<boost::edge_weight2_t, double, boost::no_property>::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::<anonymous>.boost::property<boost::edge_weight2_t, double, boost::no_property>::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::<anonymous>.boost::property<boost::edge_weight2_t, double, boost::no_property>::m_value' was declared here
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:80: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' is used uninitialized in this function
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' was declared here
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include   -IboostIncl   -O2 -Wall  -c minST.cpp -o minST.o
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include   -IboostIncl   -O2 -Wall  -c mincut.cpp -o mincut.o
boostIncl/boost/graph/push_relabel_max_flow.hpp: In member function 'FlowValue boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::maximum_preflow() [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >, boost::no_property, boost::listS>, EdgeCapacityMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >, boost::edge_capacity_t>, ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >, boost::edge_residual_capacity_t>, ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>&, unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >, boost::edge_reverse_t>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::no_property, unsigned int>, FlowValue = double]':
boostIncl/boost/graph/push_relabel_max_flow.hpp:340: warning: 'min_edge_iter.boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > > >*, std::vector<boost::detail::sep_<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > > >, std::allocator<boost::detail::sep_<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > > > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' may be used uninitialized in this function
boostIncl/boost/graph/push_relabel_max_flow.hpp:340: note: 'min_edge_iter.boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > > >*, std::vector<boost::detail::sep_<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > > >, std::allocator<boost::detail::sep_<unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > > > > > >, unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, int>::m_src' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, E_MF_METHOD)':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator<std::vector<unsigned int, std::allocator<unsigned int> > >]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, unsigned int, boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
boostIncl/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include   -IboostIncl   -O2 -Wall  -c ordering.cpp -o ordering.o
boostIncl/boost/graph/detail/adjacency_list.hpp: In member function 'void boost::detail::mmd_impl<Graph, DegreeMap, InversePermutationMap, PermutationMap, SuperNodeMap, VertexIndexMap>::eliminate(typename boost::graph_traits<Graph>::vertex_descriptor) [with Graph = R_adjacency_list<boost::directedS, double>, DegreeMap = boost::iterator_property_map<int*, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, unsigned int>, int, int&>, InversePermutationMap = int*, PermutationMap = int*, SuperNodeMap = boost::iterator_property_map<int*, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, unsigned int>, int, int&>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, unsigned int>]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::no_property>::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::no_property>::m_value' was declared here
boostIncl/boost/bind/placeholders.hpp: At global scope:
boostIncl/boost/bind/placeholders.hpp:56: warning: '<unnamed>::_3' defined but not used
boostIncl/boost/bind/placeholders.hpp:57: warning: '<unnamed>::_4' defined but not used
boostIncl/boost/bind/placeholders.hpp:58: warning: '<unnamed>::_5' defined but not used
boostIncl/boost/bind/placeholders.hpp:59: warning: '<unnamed>::_6' defined but not used
boostIncl/boost/bind/placeholders.hpp:60: warning: '<unnamed>::_7' defined but not used
boostIncl/boost/bind/placeholders.hpp:61: warning: '<unnamed>::_8' defined but not used
boostIncl/boost/bind/placeholders.hpp:62: warning: '<unnamed>::_9' defined but not used
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include   -IboostIncl   -O2 -Wall  -c shortestPath.cpp -o shortestPath.o
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'std::pair<typename Config::edge_descriptor, bool> boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, boost::vec_adj_list_impl<G, C, B>&) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, Config = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config, Base = boost::directed_graph_helper<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config>]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::<anonymous>.boost::property<boost::edge_weight2_t, double, boost::no_property>::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::<anonymous>.boost::property<boost::edge_weight2_t, double, boost::no_property>::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>, DistanceMatrix = Basic2DMatrix<double>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, unsigned int>, Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, DistanceZero = double]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::<anonymous>.boost::property<boost::edge_weight2_t, double, boost::no_property>::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::<anonymous>.boost::property<boost::edge_weight2_t, double, boost::no_property>::m_value' was declared here
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:80: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' is used uninitialized in this function
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* BGL_bellman_ford_shortest_paths(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::no_property>::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::no_property>::m_value' was declared here
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include   -IboostIncl   -O2 -Wall  -c sna.cpp -o sna.o
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_target' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, unsigned int>::m_source' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'std::pair<typename Config::edge_descriptor, bool> boost::add_edge(typename Config::vertex_descriptor, typename Config::vertex_descriptor, boost::vec_adj_list_impl<G, C, B>&) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, Config = boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config, Base = boost::directed_graph_helper<boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>::config>]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::<anonymous>.boost::property<boost::edge_weight2_t, double, boost::no_property>::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::<anonymous>.boost::property<boost::edge_weight2_t, double, boost::no_property>::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>, DistanceMatrix = Basic2DMatrix<double>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, unsigned int>, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, DistanceZero = double]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::<anonymous>.boost::property<boost::edge_weight2_t, double, boost::no_property>::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::<anonymous>.boost::property<boost::edge_weight2_t, double, boost::no_property>::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::m_value' was declared here
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::<anonymous>.boost::property<boost::edge_weight2_t, double, boost::no_property>::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >::<anonymous>.boost::property<boost::edge_weight2_t, double, boost::no_property>::m_value' was declared here
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:80: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' is used uninitialized in this function
boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor<boost::dijkstra_visitor<boost::null_visitor>, boost::relaxed_heap<unsigned int, boost::indirect_cmp<boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less<double> >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_distance_t, double, boost::no_property>, unsigned int> >, boost::adj_list_edge_property_map<boost::directed_tag, double, double&, unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map<boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>, boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::property<boost::vertex_distance_t, double, boost::no_property>, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus<double>, std::less<double> >::m_decreased' was declared here
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include   -IboostIncl   -O2 -Wall  -c transitive_closure.cpp -o transitive_closure.o
boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'void boost::transitive_closure(const Graph&, GraphTC&, G_to_TC_VertexMap, VertexIndexMap) [with Graph = R_adjacency_list<boost::directedS, double>, GraphTC = R_adjacency_list<boost::directedS, double>, G_to_TC_VertexMap = boost::iterator_property_map<unsigned int*, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, unsigned int>, unsigned int, unsigned int&>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, unsigned int>]':
boostIncl/boost/graph/detail/adjacency_list.hpp:263: warning: 'p.boost::property<boost::edge_weight_t, double, boost::no_property>::m_value' is used uninitialized in this function
boostIncl/boost/graph/detail/adjacency_list.hpp:2116: note: 'p.boost::property<boost::edge_weight_t, double, boost::no_property>::m_value' was declared here
boostIncl/boost/bind/placeholders.hpp: At global scope:
boostIncl/boost/bind/placeholders.hpp:56: warning: '<unnamed>::_3' defined but not used
boostIncl/boost/bind/placeholders.hpp:57: warning: '<unnamed>::_4' defined but not used
boostIncl/boost/bind/placeholders.hpp:58: warning: '<unnamed>::_5' defined but not used
boostIncl/boost/bind/placeholders.hpp:59: warning: '<unnamed>::_6' defined but not used
boostIncl/boost/bind/placeholders.hpp:60: warning: '<unnamed>::_7' defined but not used
boostIncl/boost/bind/placeholders.hpp:61: warning: '<unnamed>::_8' defined but not used
boostIncl/boost/bind/placeholders.hpp:62: warning: '<unnamed>::_9' defined but not used
g++-sjlj   -Ie:/biocbld/bbs-2.1-bioc/R/include   -IboostIncl   -O2 -Wall  -c wavefront.cpp -o wavefront.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.1-bioc/R/include  -i RBGL_res.rc -o RBGL_res.o
g++-sjlj   -shared -s  -o RBGL.dll RBGL.def bbc.o cliques.o clusteringCoef.o hcs.o incrConnComp.o interfaces.o layout.o minST.o mincut.o ordering.o shortestPath.o sna.o transitive_closure.o wavefront.o RBGL_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package RBGL for lazy loading
Loading required package: graph
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'RBGL'
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Compiling e:\biocbld\bbs-2.1-bioc\meat\RBGL\chm\RBGL.chm





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Created e:\biocbld\bbs-2.1-bioc\meat\RBGL\chm\RBGL.chm, 65,521 bytes

Compression decreased file by 89,467 bytes.

  adding MD5 sums

* DONE (RBGL)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'RBGL_1.14.0.tar.gz'