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Package 181/234HostnameOSArchBUILDCHECKBUILD BIN
reb 1.12.0
Karl J. Dykema
Last Changed Date: 2007-10-02 17:41:09 -0700
Last Changed Rev: 27709
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  OK  OK 
pitt Mac OS X (10.4.10) i386  OK  OK [ OK ]
Package: reb
Version: 1.12.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh reb_1.12.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R reb.buildbin-libdir
RetCode: 0
Time: 4.8 seconds
Status: OK
PackageFile: reb_1.12.0.tgz

Command output

                    INSTALLATION WITH 'R CMD INSTALL reb_1.12.0.tar.gz'

* Installing to library 'reb.buildbin-libdir'
* Installing *source* package 'reb' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -msse3    -fPIC  -g -O2 -Wall -march=nocona -c movbin.c -o movbin.o
movbin.c: In function 'bcount':
movbin.c:37: warning: suggest parentheses around comparison in operand of &
movbin.c: In function 'bscore':
movbin.c:48: warning: implicit declaration of function 'sqrt'
movbin.c:48: warning: incompatible implicit declaration of built-in function 'sqrt'
movbin.c: In function 'mean':
movbin.c:63: warning: suggest parentheses around comparison in operand of &
movbin.c: In function 'mspan_mov_binom_mx':
movbin.c:128: warning: unused variable 'im_mx'
movbin.c: In function 'mspan_mov_binom':
movbin.c:145: warning: unused variable 'c'
movbin.c:145: warning: unused variable 'r'
movbin.c: In function 'main':
movbin.c:168: warning: unused variable 'nr'
movbin.c:166: warning: unused variable 'rlen'
movbin.c:163: warning: unused variable 'range'
movbin.c:162: warning: unused variable 'sum_mx'
movbin.c:162: warning: unused variable 'sum_vec'
movbin.c:161: warning: unused variable 'im_mx'
movbin.c:161: warning: unused variable 'im_vec'
movbin.c:160: warning: unused variable 'gx2'
movbin.c:158: warning: unused variable 'data'
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o reb.so movbin.o   -F/Library/Frameworks/R.framework/.. -framework R 
** arch - ppc
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -c movbin.c -o movbin.o
movbin.c: In function 'bcount':
movbin.c:37: warning: suggest parentheses around comparison in operand of &
movbin.c: In function 'bscore':
movbin.c:48: warning: implicit declaration of function 'sqrt'
movbin.c:48: warning: incompatible implicit declaration of built-in function 'sqrt'
movbin.c: In function 'mean':
movbin.c:63: warning: suggest parentheses around comparison in operand of &
movbin.c: In function 'mspan_mov_binom_mx':
movbin.c:128: warning: unused variable 'im_mx'
movbin.c: In function 'mspan_mov_binom':
movbin.c:145: warning: unused variable 'c'
movbin.c:145: warning: unused variable 'r'
movbin.c: In function 'main':
movbin.c:168: warning: unused variable 'nr'
movbin.c:166: warning: unused variable 'rlen'
movbin.c:163: warning: unused variable 'range'
movbin.c:162: warning: unused variable 'sum_mx'
movbin.c:162: warning: unused variable 'sum_vec'
movbin.c:161: warning: unused variable 'im_mx'
movbin.c:161: warning: unused variable 'im_vec'
movbin.c:160: warning: unused variable 'gx2'
movbin.c:158: warning: unused variable 'data'
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o reb.so movbin.o   -F/Library/Frameworks/R.framework/.. -framework R 
** R
** data
** inst
** help
Note: unmatched right brace in 'regmap' on or after line 15
 >>> Building/Updating help pages for package 'reb'
     Formats: text html latex example 
  Hs.arms                           text    html    latex
  absMax                            text    html    latex   example
  buildChromCytoband                text    html    latex   example
  buildChromMap                     text    html    latex   example
  cset2band                         text    html    latex   example
  fromRevIsh                        text    html    latex   example
  isAbnormal                        text    html    latex   example
  mcr.eset                          text    html    latex   example
  movbin                            text    html    latex   example
  movt                              text    html    latex   example
  naMean                            text    html    latex   example
  regmap                            text    html    latex   example
  revish                            text    html    latex   example
  rmAmbigMappings                   text    html    latex   example
  smoothByRegion                    text    html    latex   example
  summarizeByRegion                 text    html    latex   example
  tBinomTest                        text    html    latex   example
  writeGFF3                         text    html    latex   example
** building package indices ...
* DONE (reb)