Package: lymphoma

Version: 1.6.5

Command: /home/biocbuild/bbs-2.0-bioc/R/bin/R CMD check lymphoma_1.6.5.tar.gz

RetCode: 0

Time: 49.3 seconds

Status: WARNINGS

CheckDir: lymphoma.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.0-data-experiment/meat/lymphoma.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'lymphoma/DESCRIPTION' ... OK
* this is package 'lymphoma' version '1.6.5'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'lymphoma' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  lymphNormvsn lymphoma lymphRaw
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating lymphoma-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating lymphoma-manual.tex ... OK
* checking lymphoma-manual.tex ... OK

WARNING: There was 1 warning, see
  /home/biocbuild/bbs-2.0-data-experiment/meat/lymphoma.Rcheck/00check.log
for details

* Installing *source* package 'lymphoma' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'lymphoma'
     Formats: text html latex example 
  gentlecol                         text    html    latex
** building package indices ...
* DONE (lymphoma)