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exonmap

1.0.07

Michal Okoniewski
Last Changed Date: 2007-08-22 06:18:04 -0700
Last Changed Rev: 26584
lamb1 Linux (SUSE 10.1) x86_64  OK  WARNINGS 
wellington Linux (SUSE 9.2) i686  OK [ ERROR ]
lemming Windows Server 2003 (32-bit) x64  OK  WARNINGS  OK 
Package: exonmap
Version: 1.0.07
Command: /loc/biocbuild/bbs-2.0-bioc/R/bin/R CMD check exonmap_1.0.07.tar.gz
RetCode: 1
Time: 21.8 seconds
Status: ERROR
CheckDir: exonmap.Rcheck
Warnings: NA

Command output

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/bbs-2.0-bioc/meat/exonmap.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'exonmap/DESCRIPTION' ... OK
* this is package 'exonmap' version '1.0.07'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'exonmap' can be installed ... ERROR
Installation failed.
See '/extra/loc/biocbuild/bbs-2.0-bioc/meat/exonmap.Rcheck/00install.out' for details.

exonmap.Rcheck/00install.out:

* Installing *source* package 'exonmap' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: simpleaffy
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: RColorBrewer
Loading required package: RMySQL
Loading required package: DBI
Error in dyn.load(x, as.logical(local), as.logical(now)) : 
	unable to load shared library '/loc/biocbuild/bbs-2.0-bioc/R/library/RMySQL/libs/RMySQL.so':
  /loc/biocbuild/bbs-2.0-bioc/R/library/RMySQL/libs/RMySQL.so: undefined symbol: mysql_more_results
Error: package 'RMySQL' could not be loaded
Execution halted
ERROR: lazy loading failed for package 'exonmap'
** Removing '/extra/loc/biocbuild/bbs-2.0-bioc/meat/exonmap.Rcheck/exonmap'