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ecolitk

1.8.0

Laurent
Last Changed Date: 2007-04-24 11:21:48 -0700
Last Changed Rev: 24214
lamb1 Linux (SUSE 10.1) x86_64  ERROR skipped
wellington Linux (SUSE 9.2) i686  ERROR skipped
lemming Windows Server 2003 (32-bit) x64 [ ERROR ]skippedskipped
Package: ecolitk
Version: 1.8.0
Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD build ecolitk
RetCode: 1
Time: 44.5 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'ecolitk/DESCRIPTION' ... OK
* preparing 'ecolitk':
* checking DESCRIPTION meta-information ... OK
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.0-bioc/tmpdir/Rinst422045315


---------- Making package ecolitk ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'ecolitk'
     Formats: text html latex example chm 
  ecoli.data                        text    html    latex   example chm
  ecoligenome.operon                text    html    latex   example chm
  ecoligenomeBNUM                   text    html    latex           chm
  ecoligenomeBNUM2MULTIFUN          text    html    latex           chm
  gccontent                         text    html    latex           chm
  linkedmultiget                    text    html    latex   example chm
  multiFun                          text    html    latex   example chm
  pointsCircle                      text    html    latex   example chm
  polar2xy                          text    html    latex   example chm
  polygonChrom                      text    html    latex   example chm
  wstringapply                      text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.0-bioc\meat\ecolitk\chm\ecolitk.chm





Compile time: 0 minutes, 0 seconds

12	Topics

45	Local links

4	Internet links

1	Graphic





Created d:\biocbld\bbs-2.0-bioc\meat\ecolitk\chm\ecolitk.chm, 29,424 bytes

Compression decreased file by 13,213 bytes.

  adding MD5 sums

* DONE (ecolitk)
* creating vignettes ... ERROR
Loading required package: affy
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: ecoliLeucine
Loading required package: ecolicdf

Error: processing vignette 'ecolitk.Rnw' failed with diagnostics:
 chunk 16 
Error in err(isConflict[!isNull]) : assayData element dimnames conflict: se.exprs, exprs
In addition: Warning messages:
1: '\.' is an unrecognized escape in a character string 
2: unrecognized escape removed from "^1\\\.6" 
Execution halted