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Package 106/214HostnameOSArchBUILDCHECKBUILD BIN

limma

2.10.0

Gordon Smyth
Last Changed Date: 2007-04-24 11:21:48 -0700
Last Changed Rev: 24214
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
churchill Solaris 2.9 sparc  OK  OK 
lemming Windows Server 2003 (32-bit) x64  OK [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  OK  OK 
derby Mac OS X (10.4.9) i686  OK  OK 
Package: limma
Version: 2.10.0
Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check limma_2.10.0.tar.gz
RetCode: 0
Time: 236.2 seconds
Status: OK
CheckDir: limma.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.0-bioc/meat/limma.Rcheck'
* using R version 2.5.0 (2007-04-23)
* checking for file 'limma/DESCRIPTION' ... OK
* this is package 'limma' version '2.10.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'limma' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating limma-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/cygdrive/d/biocbld/bbs-2.0-bioc/meat/limma.Rcheck/tests'
  Running 'limma-Tests.R'
  Comparing 'limma-Tests.Rout' to 'limma-Tests.Rout.save' ...OK
make[1]: Leaving directory `/cygdrive/d/biocbld/bbs-2.0-bioc/meat/limma.Rcheck/tests'
 OK
* checking package vignettes in 'inst/doc' ... OK
* creating limma-manual.tex ... OK
* checking limma-manual.tex ... OK

limma.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/limma.Rcheck


---------- Making package limma ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'limma'
     Formats: text html latex example chm 
  01Introduction                    text    html    latex           chm
  02classes                         text    html    latex           chm
  03reading                         text    html    latex           chm
  04Background                      text    html    latex           chm
  05Normalization                   text    html    latex           chm
  06linearmodels                    text    html    latex           chm
  07SingleChannel                   text    html    latex           chm
  08Tests                           text    html    latex           chm
  09Diagnostics                     text    html    latex           chm
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  exprset2                          text    html    latex           chm
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  geneSetTest                       text    html    latex   example chm
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  isnumeric                         text    html    latex   example chm
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  limmaUsersGuide                   text    html    latex   example chm
  lm.series                         text    html    latex           chm
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  normalizeWithinArrays             text    html    latex   example chm
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  normalizeprintorder               text    html    latex   example chm
  normalizequantiles                text    html    latex           chm
  normexp                           text    html    latex           chm
  normexpfit                        text    html    latex   example chm
  normexpsignal                     text    html    latex   example chm
  plotDensities                     text    html    latex   example chm
  plotFB                            text    html    latex           chm
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  weightedmedian                    text    html    latex   example chm
  writefit                          text    html    latex           chm
  zscore                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.0-bioc\meat\limma.Rcheck\00_pkg_src\limma\chm\limma.chm


Compile time: 0 minutes, 1 second
129	Topics
669	Local links
17	Internet links
1	Graphic


Created d:\biocbld\bbs-2.0-bioc\meat\limma.Rcheck\00_pkg_src\limma\chm\limma.chm, 207,826 bytes
Compression decreased file by 322,701 bytes.
  preparing package limma for lazy loading
  adding MD5 sums

* DONE (limma)