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Package 4/214HostnameOSArchBUILDCHECKBUILD BIN

adSplit

1.6.0

Claudio Lottaz
Last Changed Date: 2007-04-24 11:21:48 -0700
Last Changed Rev: 24214
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
churchill Solaris 2.9 sparc  OK  OK 
lemming Windows Server 2003 (32-bit) x64  OK  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64 [ ERROR ]skippedskipped
derby Mac OS X (10.4.9) i686  OK  OK 
Package: adSplit
Version: 1.6.0
Command: E:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD build adSplit
RetCode: 1
Time: 57.2 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'adSplit/DESCRIPTION' ... OK
* preparing 'adSplit':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.0-bioc/tmpdir/Rinst433606961


---------- Making package adSplit ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making adSplit.d from adSplit.cpp
g++   -Ie:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c adSplit.cpp -o adSplit.o
adSplit.cpp: In function `void isis(char**, double*, int*, int*, int*, int*, int*, double*, int*)':
adSplit.cpp:437: warning: 's' might be used uninitialized in this function
windres -I e:/biocbld/bbs-2.0-bioc/R/include  -i adSplit_res.rc -o adSplit_res.o
g++  -shared -s  -o adSplit.dll adSplit.def adSplit.o adSplit_res.o  -Le:/biocbld/bbs-2.0-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: cluster
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
Loading required package: affy
Loading required package: affyio
Loading required package: GO
Loading required package: KEGG
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'adSplit'
     Formats: text html latex example chm 
  adSplit-internal                  text    html    latex           chm
  adSplit                           text    html    latex   example chm
  diana2means                       text    html    latex   example chm
  drawRandomPS                      text    html    latex   example chm
  golubKEGGSplits                   text    html    latex   example chm
  hist.splitSet                     text    html    latex   example chm
  image.splitSet                    text    html    latex   example chm
  makeEID2PROBESenv                 text    html    latex   example chm
  print.split                       text    html    latex           chm
  print.splitSet                    text    html    latex   example chm
  randomDiana2means                 text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.0-bioc\meat\adSplit\chm\adSplit.chm





Compile time: 0 minutes, 0 seconds

12	Topics

28	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.0-bioc\meat\adSplit\chm\adSplit.chm, 28,310 bytes

Compression decreased file by 6,766 bytes.

  adding MD5 sums

* DONE (adSplit)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: cluster
Loading required package: multtest
Loading required package: survival
Loading required package: splines
Loading required package: affy
Loading required package: affyio
Loading required package: GO
Loading required package: KEGG
Loading required package: hu6800
  determining 1000 random DLD-scores with 20 probe sets each (wait for 10 dots)
  ..........
epstopdf splitSet.eps
Error: /invalidfont in findfont
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Dictionary stack:
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Current allocation mode is local
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l.44 \chapter
             {Introduction} [1]
Chapter 1.

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[2]

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[3]
Chapter 2.

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7.


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[4] [5] [6] [7]
Chapter 3.
[8] <tr_2005_02-012.pdf, id=125, 433.62pt x 216.81pt> <use tr_2005_02-012.pdf>
[9] [10 <tr_2005_02-012.pdf>]
Chapter 4.
[11] [12] <tr_2005_02-019.pdf, id=156, 361.35pt x 361.35pt>
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Chapter 5.
[15] [16] (tr_2005_02.aux)

LaTeX Warning: There were undefined references.


LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.

 )
(see the transcript file for additional information)<C:/Program Files/MiKTeX 2.
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Output written on tr_2005_02.pdf (17 pages, 196065 bytes).
Transcript written on tr_2005_02.log.
pdflatex tr_2005_02
This is pdfeTeX, Version 3.141592-1.30.6-2.2 (MiKTeX 2.5)
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Chapter 1.
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[3]
Chapter 2.
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Chapter 3.
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[9] [10 <tr_2005_02-012.pdf>]
Chapter 4.
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Chapter 5.
[15] [16] (tr_2005_02.aux) )
(see the transcript file for additional information)<C:/Program Files/MiKTeX 2.
5/fonts/type1/bluesky/cm/cmtt10.pfb><C:/Program Files/MiKTeX 2.5/fonts/type1/bl
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mssbx10.pfb>
Output written on tr_2005_02.pdf (17 pages, 206111 bytes).
Transcript written on tr_2005_02.log.
pdflatex tr_2005_02
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(tr_2005_02.tex
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loading : Context Support Macros / Miscellaneous (2004.10.26)
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loading : Context Support Macros / PDF (2004.03.26)
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o.pdf> <minerva_bcb.pdf>] (tr_2005_02.toc)
! pdfTeX warning (ext4): destination with the same identifier (name{page.1}) ha
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l.44 \chapter
             {Introduction} [1]
Chapter 1.
[2]
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[3]
Chapter 2.
[4] [5] [6] [7]
Chapter 3.
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[9] [10 <tr_2005_02-012.pdf>]
Chapter 4.
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<use splitSet.pdf>
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[][] 
[13 <tr_2005_02-019.pdf>] [14 <splitSet.pdf>]
Chapter 5.
[15] [16] (tr_2005_02.aux) )
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Transcript written on tr_2005_02.log.
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/bin/rm -f *.dvi *.ps tr_2005_02-* *.html Rplots* tr_2005_02.tex