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GeneticsBase

1.0.0

Gregory Warnes
Last Changed Date: 2007-04-24 11:21:48 -0700
Last Changed Rev: 24214
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
churchill Solaris 2.9 sparc  OK  OK 
lemming Windows Server 2003 (32-bit) x64  OK  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64 [ OK ] OK  OK 
derby Mac OS X (10.4.9) i686  OK  OK 
Package: GeneticsBase
Version: 1.0.0
Command: E:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD build GeneticsBase
RetCode: 0
Time: 44.7 seconds
Status: OK
PackageFile: GeneticsBase_1.0.0.tar.gz

Command output

* checking for file 'GeneticsBase/DESCRIPTION' ... OK
* preparing 'GeneticsBase':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.0-bioc/tmpdir/Rinst428471673


---------- Making package GeneticsBase ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making LdMax.d from LdMax.cpp
making convert.d from convert.cpp
making getLDdist.d from getLDdist.cpp
making readGenes.ped.d from readGenes.ped.cpp
making register.d from register.cpp
g++   -Ie:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c LdMax.cpp -o LdMax.o
g++   -Ie:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c convert.cpp -o convert.o
convert.cpp: In function `SEXPREC* convert2(SEXPREC*, SEXPREC*, SEXPREC*)':
convert.cpp:6: warning: unused variable 'maxlen'
g++   -Ie:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c getLDdist.cpp -o getLDdist.o
g++   -Ie:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c readGenes.ped.cpp -o readGenes.ped.o
readGenes.ped.cpp: In function `int countLines(FILE*, int, int)':
readGenes.ped.cpp:86: warning: 'tmpnc2' might be used uninitialized in this function
g++   -Ie:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c register.cpp -o register.o
windres -I e:/biocbld/bbs-2.0-bioc/R/include  -i GeneticsBase_res.rc -o GeneticsBase_res.o
g++  -shared -s  -o GeneticsBase.dll GeneticsBase.def LdMax.o convert.o getLDdist.o readGenes.ped.o register.o GeneticsBase_res.o  -Le:/biocbld/bbs-2.0-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: combinat

Attaching package: 'combinat'


	The following object(s) are masked from package:utils :

	 combn 

Loading required package: xtable
Loading required package: mvtnorm
  installing inst files
  installing data files
  installing man source files
  installing indices
Loading required package: methods
Loading required package: combinat

Attaching package: 'combinat'


	The following object(s) are masked from package:utils :

	 combn 

Loading required package: xtable
Loading required package: mvtnorm
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'GeneticsBase'
     Formats: text html latex example chm 
  ALZH                              text    html    latex   example chm
  CAMP                              text    html    latex   example chm
  HWE                               text    html    latex   example chm
  HWE.chisq                         text    html    latex   example chm
  HWE.exact                         text    html    latex   example chm
  LD-class                          text    html    latex   example chm
  LD                                text    html    latex   example chm
  LDband-class                      text    html    latex   example chm
  LDdist-class                      text    html    latex           chm
  PGtables                          text    html    latex   example chm
  PerlgenExample                    text    html    latex   example chm
  PfizerExample                     text    html    latex   example chm
  alleleCount                       text    html    latex   example chm
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  fastGrid                          text    html    latex   example chm
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  read.pfizer                       text    html    latex   example chm
  read.phe                          text    html    latex   example chm
  readGenes                         text    html    latex   example chm
  readGenes.ped                     text    html    latex   example chm
  readGenes.perlegen                text    html    latex   example chm
  readGenes.pfizer                  text    html    latex   example chm
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  transTables                       text    html    latex   example chm
  xbat                              text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.0-bioc\meat\GeneticsBase\chm\GeneticsBase.chm





Compile time: 0 minutes, 1 second

68	Topics

261	Local links

7	Internet links

1	Graphic





Created e:\biocbld\bbs-2.0-bioc\meat\GeneticsBase\chm\GeneticsBase.chm, 99,675 bytes

Compression decreased file by 186,316 bytes.

  adding MD5 sums

* DONE (GeneticsBase)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'GeneticsBase_1.0.0.tar.gz'