Package: prism

Version: 0.1.1

Command: /loc/biocbuild/2.0d/R/bin/R CMD build prism

RetCode: 1

Time: 10.4 seconds

Status: ERROR

PackageFile: None

* checking for file 'prism/DESCRIPTION' ... OK
* preparing 'prism':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'prism' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c bisegment.c -o bisegment.o
bisegment.c: In function `R_link_bisegment':
bisegment.c:136: warning: unused variable `bi'
bisegment.c:136: warning: unused variable `bj'
bisegment.c:144: warning: unused variable `gamma_start'
bisegment.c: In function `bisegment':
bisegment.c:314: warning: unused variable `kk'
bisegment.c:314: warning: unused variable `iii'
bisegment.c:314: warning: unused variable `jjj'
bisegment.c:314: warning: unused variable `l'
bisegment.c:321: warning: unused variable `stop_criteria_M'
bisegment.c:325: warning: unused variable `i_start'
bisegment.c:325: warning: unused variable `i_end'
bisegment.c:326: warning: unused variable `j_start'
bisegment.c:326: warning: unused variable `j_end'
bisegment.c: In function `initialize_image':
bisegment.c:633: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function `up_date_beta_mrf':
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:780: warning: suggest parentheses around comparison in operand of &
bisegment.c:781: warning: suggest parentheses around comparison in operand of &
bisegment.c:784: warning: suggest parentheses around comparison in operand of &
bisegment.c:789: warning: suggest parentheses around comparison in operand of &
bisegment.c:794: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function `up_date_w':
bisegment.c:873: warning: unused variable `nb_pixel'
bisegment.c:874: warning: unused variable `sum_res'
bisegment.c: In function `compute_difference':
bisegment.c:887: warning: unused variable `i'
bisegment.c: In function `compute_uncertainty':
bisegment.c:901: warning: unused variable `iii'
bisegment.c:901: warning: unused variable `jjj'
bisegment.c:904: warning: unused variable `nb_flagged'
bisegment.c: In function `bisegment_mcmc':
bisegment.c:981: warning: unused variable `countrho'
bisegment.c:982: warning: unused variable `iii'
bisegment.c:982: warning: unused variable `jjj'
bisegment.c:982: warning: unused variable `l'
bisegment.c:988: warning: unused variable `nb_spot'
bisegment.c:989: warning: unused variable `log_like_rho'
bisegment.c:990: warning: unused variable `log_like_rho_new'
bisegment.c:991: warning: unused variable `rho_new'
bisegment.c:1000: warning: unused variable `nb_pix'
bisegment.c: In function `slice_sampling_lambda_eps':
bisegment.c:1830: warning: suggest parentheses around comparison in operand of &
bisegment.c:1839: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function `change_resolution_mcmc':
bisegment.c:2120: warning: suggest parentheses around comparison in operand of &
bisegment.c:2122: warning: suggest parentheses around comparison in operand of &
bisegment.c:2124: warning: suggest parentheses around comparison in operand of &
bisegment.c: In function `bisegment_mcmc':
bisegment.c:1285: warning: control reaches end of non-void function
bisegment.c: In function `bisegment':
bisegment.c:460: warning: control reaches end of non-void function
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c find_grid.c -o find_grid.o
find_grid.c: In function `find_grid':
find_grid.c:12: warning: `index_min' might be used uninitialized in this function
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c util.c -o util.o
util.c: In function `qr_solve':
util.c:623: warning: implicit declaration of function `dqrdc2_'
util.c:638: warning: implicit declaration of function `dqrcf_'
util.c:602: warning: unused variable `vmax'
util.c: In function `inverse':
util.c:661: warning: unused variable `j'
util.c: In function `product_mat_vec':
util.c:708: warning: unused variable `k'
util.c: In function `slice_sampling_phi':
util.c:816: warning: suggest parentheses around comparison in operand of &
util.c:824: warning: suggest parentheses around comparison in operand of &
util.c:798: warning: unused variable `v'
util.c: In function `slice_sampling_lxi':
util.c:871: warning: suggest parentheses around comparison in operand of &
util.c:880: warning: suggest parentheses around comparison in operand of &
util.c: In function `slice_sampling_lambda':
util.c:943: warning: suggest parentheses around comparison in operand of &
util.c:952: warning: suggest parentheses around comparison in operand of &
util.c: In function `slice_sampling_b':
util.c:1008: warning: suggest parentheses around comparison in operand of &
util.c:1016: warning: suggest parentheses around comparison in operand of &
util.c: In function `slice_sampling_a':
util.c:1063: warning: suggest parentheses around comparison in operand of &
util.c:1071: warning: suggest parentheses around comparison in operand of &
util.c: In function `slice_sampling_lxi':
util.c:856: warning: `J' might be used uninitialized in this function
util.c:856: warning: `K' might be used uninitialized in this function
gcc -std=gnu99 -shared -L/usr/local/lib -o prism.so bisegment.o find_grid.o util.o   
** R
** data
** inst
** save image
Loading required package: EBImage
Error: package 'EBImage' could not be loaded
In addition: Warning message:
there is no package called 'EBImage' in: library(pkg, character.only = TRUE, logical = TRUE, lib.loc = lib.loc) 
Execution halted
ERROR: execution of package source for 'prism' failed
** Removing '/tmp/Rinst105508299/prism'
 ERROR
Installation failed.
Removing '/tmp/Rinst105508299'