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| Package 172/208 | OS | Arch | BUILD | CHECK | BUILD BIN |
RPostgreSQL0.0.0H. Pages | Linux (SUSE 9.2) | x86_64 | OK | ERROR | |
| Linux (SUSE 10.1) | x86_64 | OK | ERROR | ||
| Linux (SUSE 9.2) | i686 | OK | [ ERROR ] | ||
| Solaris 2.9 | sparc | OK | ERROR | ||
| Windows Server 2003 | x86_64 | OK | ERROR | ERROR | |
| Windows Server 2003 | NA | OK | ERROR | ERROR | |
| Mac OS X (10.4.6) | i686 | OK | ERROR |
| Package: RPostgreSQL |
| Version: 0.0.0 |
| Command: /loc/biocbuild/2.0d/R/bin/R CMD check RPostgreSQL_0.0.0.tar.gz |
| RetCode: 1 |
| Time: 24.8 seconds |
| Status: ERROR |
| CheckDir: RPostgreSQL.Rcheck |
| Warnings: NA |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/2.0d/Rpacks/RPostgreSQL.Rcheck' * using R version 2.5.0 Under development (unstable) (2006-12-05 r40126) * checking for file 'RPostgreSQL/DESCRIPTION' ... OK * this is package 'RPostgreSQL' version '0.0.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'RPostgreSQL' can be installed ... ERROR Installation failed. See '/extra/loc/biocbuild/2.0d/Rpacks/RPostgreSQL.Rcheck/00install.out' for details.
RPostgreSQL.Rcheck/00install.out:
* Installing *source* package 'RPostgreSQL' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for compress in -lz... yes
checking for getopt_long in -lc... yes
checking for mysql_init in -lmysqlclient... yes
checking for mysql.h... no
checking for /usr/local/include/mysql/mysql.h... no
checking for /usr/include/mysql/mysql.h... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/include/mysql -I/usr/local/include -fpic -g -O2 -Wall -c RS-DBI.c -o RS-DBI.o
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/include/mysql -I/usr/local/include -fpic -g -O2 -Wall -c RS-MySQL.c -o RS-MySQL.o
gcc -std=gnu99 -shared -L/usr/local/lib -o RPostgreSQL.so RS-DBI.o RS-MySQL.o -lmysqlclient -lz
** R
** inst
WARNING: use of install.R is no longer supported
** preparing package for lazy loading
Loading required package: DBI
Error in setIs(Class, class2, classDef = classDef, where = where) :
Unable to find package environment for class "DBIObject" to revise subclass information
Warning in .removeSuperclassBackRefs(Class, classDef, classWhere) :
Couldn't find superclass "DBIObject" to clean up when removing subclass references to class "MySQLObject"
Error in setClass("MySQLObject", representation("DBIObject", "dbObjectId", :
error in contained classes ("DBIObject") for class "MySQLObject"; class definition removed from "RPostgreSQL"
Error: unable to load R code in package 'RPostgreSQL'
Execution halted
ERROR: lazy loading failed for package 'RPostgreSQL'
** Removing '/extra/loc/biocbuild/2.0d/Rpacks/RPostgreSQL.Rcheck/RPostgreSQL'