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Package 136/208OSArchBUILDCHECKBUILD BIN

ontoTools

1.11.0

Vince Carey
Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 10.1) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Windows Server 2003 x86_64 OK  OK  OK 
Windows Server 2003 NA[ OK ] ERROR  OK 
Mac OS X (10.4.6) i686 OK  OK 
Package: ontoTools
Version: 1.11.0
Command: E:\biocbld\2.0d\R\bin\R.exe CMD build ontoTools
RetCode: 0
Time: 184.5 seconds
Status: OK
PackageFile: ontoTools_1.11.0.tar.gz

Command output

* checking for file 'ontoTools/DESCRIPTION' ... OK
* preparing 'ontoTools':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/2.0d/tmpdir/Rinst498487088


---------- Making package ontoTools ------------
  adding build stamp to DESCRIPTION
  installing R files
  save image
Loading required package: graph
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: SparseM
Package SparseM (0.71) loaded.  To cite, see citation("SparseM")
Loading required package: GO
Loading required package: annotate
[1] "rootedDAG"
[1] "root"
[1] "root"
[1] "DAG"
[1] "DAG"
[1] "getMatrix"
[1] "getMatrix"
[1] "compoundGraph"
[1] "grList"
[1] "grList"
[1] "between"
[1] "between"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "adjMat"
[1] "adjMat"
[1] TRUE
[1] "namedSparse"
[1] "dimnames"
[1] "rowinds"
[1] "colinds"
[1] "mat"
[1] "mat"
[1] "["
[1] "rowinds"
[1] "colinds"
[1] "dimnames<-"
[1] "mat"
[1] "mat"
[1] "nrow"
[1] "nrow"
[1] "ncol"
[1] "ncol"
[1] "dimnames"
[1] "as.matrix"
[1] "colSums"
[1] "rowSums"
[1] "colSums"
[1] "rowSums"
[1] "Arith"
[1] "%*%"
[1] "+"
[1] "maxval"
[1] "maxval"
[1] "show"
[1] "t"
[1] "ontology"
[1] "name"
[1] "name"
[1] "OVersion"
[1] "OVersion"
[1] "rDAG"
[1] "rDAG"
[1] "show"
[1] "accessMat"
[1] "accessMat"
[1] "OOC"
[1] "ontology"
[1] "ontology"
[1] "OOmap"
[1] "OOmap"
[1] "show"
[1] "coverageMat"
[1] "coverageMat"
[1] "provStruct"
[1] "show"
[1] "nomenclature"
[1] "taggedHierNomenclature"
[1] "show"
[1] "GDIontology"
[1] "show"
[1] "parents"
[1] "parents"
[1] "children"
[1] "children"
[1] "grep"
[1] "grep"
[1] "getTerms"
[1] "getTerms"
[1] "annotationResource"
[1] "symMapping"
[1] "typedSymMapping"
[1] "show"
[1] "GDIplatform"
[1] "show"
[1] "getDefs"
[1] "getDefs"
[1] "GDILabel"
[1] "exptArchive"
[1] "show"
[1] "exptSample"
[1] "show"
[1] "annoSource"
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'ontoTools'
     Formats: text html latex example chm 
  A.csr                             text    html    latex           chm
  GDI                               text    html    latex   example chm
  LLGOMFcp                          text    html    latex           chm
  OOC-class                         text    html    latex   example chm
  SGDIvocab                         text    html    latex   example chm
  STMA                              text    html    latex   example chm
  accessMat                         text    html    latex   example chm
  buildGOgraph                      text    html    latex   example chm
  compoundGraph-class               text    html    latex   example chm
  depthStruct                       text    html    latex   example chm
  gomfAmat                          text    html    latex           chm
  litOnto                           text    html    latex           chm
  namedSparse-class                 text    html    latex   example chm
  ontology-class                    text    html    latex   example chm
  ooMapLL2GOMFdemo                  text    html    latex           chm
  otkvEnv2namedSparse               text    html    latex   example chm
  rootedDAG-class                   text    html    latex   example chm
  semsim                            text    html    latex   example chm
  taggedHierNomenclature-class      text    html    latex   example chm
  toDot-methods                     text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\2.0d\Rpacks\ontoTools\chm\ontoTools.chm





Compile time: 0 minutes, 0 seconds

21	Topics

179	Local links

0	Internet links

1	Graphic





Created e:\biocbld\2.0d\Rpacks\ontoTools\chm\ontoTools.chm, 43,540 bytes

Compression decreased file by 61,024 bytes.

  adding MD5 sums

* DONE (ontoTools)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'ontoTools_1.11.0.tar.gz'