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oligo

0.99.29

Benilton Carvalho
Linux (SUSE 9.2) x86_64 OK  WARNINGS 
Linux (SUSE 10.1) x86_64 OK  WARNINGS 
Linux (SUSE 9.2) i686 OK  WARNINGS 
Solaris 2.9 sparc OK  WARNINGS 
Windows Server 2003 x86_64 OK  WARNINGS  OK 
Windows Server 2003 NA OK  ERROR [ OK ]
Mac OS X (10.4.6) i686 OK  WARNINGS 
Package: oligo
Version: 0.99.29
Command: E:\biocbld\2.0d\R\bin\R.exe CMD INSTALL --build oligo_0.99.29.tar.gz
RetCode: 0
Time: 23.5 seconds
Status: OK
PackageFile: oligo_0.99.29.zip

Command output


Using auto-selected zip options ' oligo-HELP=ziponly'

---------- Making package oligo ------------

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************

  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making baseProfile.d from baseProfile.c
making basecontent.d from basecontent.c
making qnorm.d from qnorm.c
making rma2.d from rma2.c
making rma_background2.d from rma_background2.c
making rma_common.d from rma_common.c
gcc  -IE:/biocbld/2.0d/R/src/extra/zlib -DHAVE_ZLIB -IE:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c baseProfile.c -o baseProfile.o
baseProfile.c: In function `gcrma_getSeq2':
baseProfile.c:14: warning: unused variable `nx'
gcc  -IE:/biocbld/2.0d/R/src/extra/zlib -DHAVE_ZLIB -IE:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c basecontent.c -o basecontent.o
gcc  -IE:/biocbld/2.0d/R/src/extra/zlib -DHAVE_ZLIB -IE:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c qnorm.c -o qnorm.o
qnorm.c: In function `qnorm_c_determine_target':
qnorm.c:1518: warning: unused variable `ind'
qnorm.c:1519: warning: unused variable `dimat'
qnorm.c:1523: warning: unused variable `ranks'
qnorm.c: In function `R_qnorm_using_target':
qnorm.c:1599: warning: unused variable `dim2'
qnorm.c: In function `qnorm_c_determine_target':
qnorm.c:1591: warning: control reaches end of non-void function
qnorm.c: At top level:
qnorm.c:114: warning: 'min' defined but not used
qnorm.c:387: warning: 'qnorm_c_old' defined but not used
qnorm.c:461: warning: 'qnorm_robust_c_old' defined but not used
gcc  -IE:/biocbld/2.0d/R/src/extra/zlib -DHAVE_ZLIB -IE:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c rma2.c -o rma2.o
gcc  -IE:/biocbld/2.0d/R/src/extra/zlib -DHAVE_ZLIB -IE:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c rma_background2.c -o rma_background2.o
gcc  -IE:/biocbld/2.0d/R/src/extra/zlib -DHAVE_ZLIB -IE:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c rma_common.c -o rma_common.o
windres --include-dir E:/biocbld/2.0d/R/include  -i oligo_res.rc -o oligo_res.o
gcc  -shared -s  -o oligo.dll oligo.def baseProfile.o basecontent.o qnorm.o rma2.o rma_background2.o rma_common.o oligo_res.o  -LE:/biocbld/2.0d/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affyio
Loading required package: splines
Creating a new generic function for "hist" in "oligo"
Creating a new generic function for "boxplot" in "oligo"
Creating a new generic function for "image" in "oligo"
Creating a new generic function for "sd" in "oligo"
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'oligo'
     Formats: text html latex example chm 
  FeatureSet-class                  text    html    latex           chm
  FeatureSet-methods                text    html    latex           chm
  SubClasses                        text    html    latex   example chm
  accessors                         text    html    latex   example chm
  allele                            text    html    latex   example chm
  as.data.frame.platformDesign      text    html    latex   example chm
  basecontent                       text    html    latex   example chm
  bg.correct                        text    html    latex           chm
  characterOrNULL-class             text    html    latex           chm
  cleanPlatformName                 text    html    latex   example chm
  crlmm                             text    html    latex   example chm
  dimensions                        text    html    latex   example chm
  featureIndex                      text    html    latex           chm
  featureInfo                       text    html    latex           chm
  fileManip                         text    html    latex           chm
  getPlatformDesign                 text    html    latex   example chm
  indexFeatureSetName               text    html    latex           chm
  indexTools                        text    html    latex           chm
  initialize-methods                text    html    latex           chm
  justsnprma                        text    html    latex   example chm
  methods-Sequences                 text    html    latex   example chm
  nProbes                           text    html    latex           chm
  names                             text    html    latex   example chm
  normalize.quantiles               text    html    latex           chm
  parsers                           text    html    latex   example chm
  platformDesign-class              text    html    latex           chm
  platformDesignName                text    html    latex           chm
  plotDensity                       text    html    latex   example chm
  probeMatch-methods                text    html    latex   example chm
  probeNames-methods                text    html    latex           chm
  probeNames                        text    html    latex           chm
  read.celfiles                     text    html    latex   example chm
  rma                               text    html    latex   example chm
  snprma                            text    html    latex   example chm
  zipping help files
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\2.0d\Rpacks\R.INSTALL\oligo\chm\oligo.chm





Compile time: 0 minutes, 0 seconds

35	Topics

153	Local links

2	Internet links

1	Graphic





Created e:\biocbld\2.0d\Rpacks\R.INSTALL\oligo\chm\oligo.chm, 44,694 bytes

Compression decreased file by 62,790 bytes.

  adding MD5 sums

packaged installation of package 'oligo' as oligo_0.99.29.zip
* DONE (oligo)