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Package 62/208OSArchBUILDCHECKBUILD BIN

flowCore

0.3.00

Nolwenn Le Meur
Linux (SUSE 9.2) x86_64 ERROR skipped
Linux (SUSE 10.1) x86_64 ERROR skipped
Linux (SUSE 9.2) i686 ERROR skipped
Solaris 2.9 sparc ERROR skipped
Windows Server 2003 x86_64 ERROR skippedskipped
Windows Server 2003 NA[ ERROR ]skippedskipped
Mac OS X (10.4.6) i686 ERROR skipped
Package: flowCore
Version: 0.3.00
Command: E:\biocbld\2.0d\R\bin\R.exe CMD build flowCore
RetCode: 1
Time: 27.5 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'flowCore/DESCRIPTION' ... OK
* preparing 'flowCore':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/2.0d/tmpdir/Rinst605289541


---------- Making package flowCore ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making biexponential.d from biexponential.c
making inPolygon.d from inPolygon.c
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c biexponential.c -o biexponential.o
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c inPolygon.c -o inPolygon.o
windres --include-dir e:/biocbld/2.0d/R/include  -i flowCore_res.rc -o flowCore_res.o
gcc  -shared -s  -o flowCore.dll flowCore.def biexponential.o inPolygon.o flowCore_res.o  -Le:/biocbld/2.0d/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'flowCore'
     Formats: text html latex example chm 
  filter-class                      text    html    latex           chm
  filter                            text    html    latex   example chm
  filterResult-class                text    html    latex           chm
  flowFrame-class                   text    html    latex   example chm
  flowSet-class                     text    html    latex   example chm
  logicleTransform                  text    html    latex   example chm
  plot                              text    html    latex   example chm
  read.FCS                          text    html    latex   example chm
  rectangleGate                     text    html    latex   example chm
  transform                         text    html    latex   example chm
  transformation-class              text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\2.0d\Rpacks\flowCore\chm\flowCore.chm





Compile time: 0 minutes, 0 seconds

12	Topics

82	Local links

1	Internet link

1	Graphic





Created e:\biocbld\2.0d\Rpacks\flowCore\chm\flowCore.chm, 33,741 bytes

Compression decreased file by 29,350 bytes.

  preparing package flowCore for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: colorspace
Loading required package: rrcov
  adding MD5 sums

* DONE (flowCore)
* creating vignettes ... ERROR
pdflatex.EXE: Windows API error 5: Access is denied.

texify: pdflatex failed for some reason (see log file).
buildVignettes(dir = '.')
Error in texi2dvi(file = bft, pdf = TRUE, clean = FALSE, quiet = quiet) : 
	running texi2dvi on 'filtering-flowCore.tex' failed
Execution halted