Package: aroma.light

Version: 1.3.0

Command: E:\biocbld\2.0d\R\bin\R.exe CMD check aroma.light_1.3.0.tar.gz

RetCode: 1

Time: 78.5 seconds

Status: ERROR

CheckDir: aroma.light.Rcheck

Warnings: NA

* checking for working latex ... OK
* using log directory 'E:/biocbld/2.0d/Rpacks/aroma.light.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'aroma.light/DESCRIPTION' ... OK
* this is package 'aroma.light' version '1.3.0'
* checking package dependencies ... WARNING
'library' or 'require' calls not declared from:
  R.utils modreg
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'aroma.light' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating aroma.light-Ex.R ... OK
* checking examples ... OK
* creating aroma.light-manual.tex ... OK
* checking aroma.light-manual.tex ... ERROR
LaTeX errors when creating DVI version.
This typically indicates Rd problems.

installing R.css in E:/biocbld/2.0d/Rpacks/aroma.light.Rcheck


---------- Making package aroma.light ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'aroma.light'
     Formats: text html latex example chm 
  1._Calibration_and_Normalization  text    html    latex           chm
  Non-documented_objects            text    html    latex           chm
  aroma.light-package               text    html    latex           chm
  averageQuantile.list              text    html    latex           chm
  backtransformAffine.matrix        text    html    latex   example chm
  calibrateMultiscan.matrix         text    html    latex   example chm
  distanceBetweenLines              text    html    latex   example chm
  fitIWPCA.matrix                   text    html    latex           chm
  iwpca.matrix                      text    html    latex   example chm
  likelihood.smooth.spline          text    html    latex   example chm
  medianPolish.matrix               text    html    latex   example chm
  normalizeAffine.matrix            text    html    latex   example chm
  normalizeCurveFit.matrix          text    html    latex   example chm
  normalizeQuantile.list            text    html    latex   example chm
  normalizeQuantile.matrix          text    html    latex   example chm
  normalizeQuantile.numeric         text    html    latex           chm
  plotDensity.list                  text    html    latex           chm
  plotMvsA.matrix                   text    html    latex           chm
  plotMvsAPairs.matrix              text    html    latex           chm
  plotMvsMPairs.matrix              text    html    latex           chm
  print.SmoothSplineLikelihood      text    html    latex           chm
  robustSmoothSpline                text    html    latex   example chm
  sampleCorrelations.matrix         text    html    latex   example chm
  sampleTuples                      text    html    latex   example chm
  weightedMedian                    text    html    latex   example chm
  wpca.matrix                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\2.0d\Rpacks\aroma.light.Rcheck\00_pkg_src\aroma.light\chm\aroma.light.chm


Compile time: 0 minutes, 0 seconds
27	Topics
78	Local links
32	Internet links
1	Graphic


Created e:\biocbld\2.0d\Rpacks\aroma.light.Rcheck\00_pkg_src\aroma.light\chm\aroma.light.chm, 83,818 bytes
Compression decreased file by 96,491 bytes.
  preparing package aroma.light for lazy loading
Loading required package: R.oo
  adding MD5 sums

* DONE (aroma.light)