1.5.0Claudio Lottaz | Linux (SUSE 9.2) | x86_64 | OK | OK | |
| Linux (SUSE 10.1) | x86_64 | OK | OK | |
| Linux (SUSE 9.2) | i686 | OK | OK | |
| Solaris 2.9 | sparc | OK | OK | |
| Windows Server 2003 | x86_64 | OK | OK | OK |
| Windows Server 2003 | NA | [ ERROR ] | skipped | skipped |
| Mac OS X (10.4.6) | i686 | OK | OK | |
* checking for file 'adSplit/DESCRIPTION' ... OK
* preparing 'adSplit':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/2.0d/tmpdir/Rinst498834878
---------- Making package adSplit ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making adSplit.d from adSplit.cpp
g++ -Ie:/biocbld/2.0d/R/include -Wall -O2 -c adSplit.cpp -o adSplit.o
adSplit.cpp: In function `void isis(char**, double*, int*, int*, int*, int*, int*, double*, int*)':
adSplit.cpp:437: warning: 's' might be used uninitialized in this function
windres --include-dir e:/biocbld/2.0d/R/include -i adSplit_res.rc -o adSplit_res.o
g++ -shared -s -o adSplit.dll adSplit.def adSplit.o adSplit_res.o -Le:/biocbld/2.0d/R/bin -lR
... DLL made
installing DLL
installing R files
save image
Loading required package: cluster
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: survival
Loading required package: splines
Loading required package: affy
Loading required package: affyio
Loading required package: GO
Loading required package: KEGG
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'adSplit'
Formats: text html latex example chm
adSplit-internal text html latex chm
adSplit text html latex example chm
diana2means text html latex example chm
drawRandomPS text html latex example chm
golubKEGGSplits text html latex example chm
hist.splitSet text html latex example chm
image.splitSet text html latex example chm
makeEID2PROBESenv text html latex example chm
print.split text html latex chm
print.splitSet text html latex example chm
randomDiana2means text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\2.0d\Rpacks\adSplit\chm\adSplit.chm
Compile time: 0 minutes, 0 seconds
12 Topics
28 Local links
0 Internet links
1 Graphic
Created e:\biocbld\2.0d\Rpacks\adSplit\chm\adSplit.chm, 28,268 bytes
Compression decreased file by 6,104 bytes.
adding MD5 sums
* DONE (adSplit)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: cluster
Loading required package: multtest
Loading required package: survival
Loading required package: splines
Loading required package: affy
Loading required package: affyio
Loading required package: GO
Loading required package: KEGG
Loading required package: hu6800
determining 1000 random DLD-scores with 20 probe sets each (wait for 10 dots)
..........
epstopdf splitSet.eps
Error: /invalidfont in findfont
Operand stack:
Helvetica Font Helvetica 1389204 Helvetica --nostringval-- Helvetica NimbusSanL-Regu Courier NimbusMonL-Regu
Execution stack:
%interp_exit .runexec2 --nostringval-- --nostringval-- --nostringval-- 2 %stopped_push --nostringval-- --nostringval-- --nostringval-- false 1 %stopped_push 1 3 %oparray_pop 1 3 %oparray_pop 1 3 %oparray_pop 1 3 %oparray_pop .runexec2 --nostringval-- --nostringval-- --nostringval-- 2 %stopped_push --nostringval-- 1 3 %oparray_pop 2 3 %oparray_pop --nostringval-- --nostringval-- --nostringval-- --nostringval-- --nostringval-- false 1 %stopped_push 5 4 %oparray_pop --nostringval-- --nostringval-- --nostringval-- 1 -1 1 --nostringval-- %for_neg_int_continue
Dictionary stack:
--dict:1123/1686(ro)(G)-- --dict:0/20(G)-- --dict:90/200(L)-- --dict:17/17(ro)(G)-- --dict:1123/1686(ro)(G)--
Current allocation mode is local
Last OS error: No such file or directory
MiKTeX GPL Ghostscript 8.54: Unrecoverable error, exit code 1
pdflatex tr_2005_02
This is pdfeTeX, Version 3.141592-1.30.6-2.2 (MiKTeX 2.5)
entering extended mode
(tr_2005_02.tex
LaTeX2e <2005/12/01>
Babel and hyphenation patterns for english, dumylang, nohyphenation, ge
rman, ngerman, french, loaded.
("C:\Program Files\MiKTeX 2.5\tex\latex\base\report.cls"
Document Class: report 2005/09/16 v1.4f Standard LaTeX document class
("C:\Program Files\MiKTeX 2.5\tex\latex\base\size11.clo")) (compdiag.sty
("C:\Program Files\MiKTeX 2.5\tex\latex\graphics\graphicx.sty"
("C:\Program Files\MiKTeX 2.5\tex\latex\graphics\keyval.sty")
("C:\Program Files\MiKTeX 2.5\tex\latex\graphics\graphics.sty"
("C:\Program Files\MiKTeX 2.5\tex\latex\graphics\trig.sty")
("C:\Program Files\MiKTeX 2.5\tex\latex\00miktex\graphics.cfg")
("C:\Program Files\MiKTeX 2.5\tex\latex\graphics\pdftex.def")))
("C:\Program Files\MiKTeX 2.5\tex\latex\graphics\color.sty"
("C:\Program Files\MiKTeX 2.5\tex\latex\00miktex\color.cfg"))
("C:\Program Files\MiKTeX 2.5\tex\latex\hyperref\hyperref.sty"
("C:\Program Files\MiKTeX 2.5\tex\latex\hyperref\pd1enc.def")
("C:\Program Files\MiKTeX 2.5\tex\latex\00miktex\hyperref.cfg")
("C:\Program Files\MiKTeX 2.5\tex\latex\oberdiek\kvoptions.sty")
Implicit mode ON; LaTeX internals redefined
("C:\Program Files\MiKTeX 2.5\tex\latex\ltxmisc\url.sty"))
*hyperref using driver hpdftex*
("C:\Program Files\MiKTeX 2.5\tex\latex\hyperref\hpdftex.def")
======================================================================
starting package maintenance...
installation directory: "C:\Program Files\MiKTeX 2.5"
package repository: ftp://ftp.eq.uc.pt/pub/software/TeX/systems/win32/miktex/tm/packages/
DBlight digest: 91cf918982171a72864dc4b6c898f013
going to download 552758 bytes
going to install 25 file(s) (1 package(s))
downloading ftp://ftp.eq.uc.pt/pub/software/TeX/systems/win32/miktex/tm/packages/ntgclass.cab...
552758 bytes, 66.69 KB/Sec
extracting files from ntgclass.cab...
pdflatex.exe: Windows API error 5: Access is denied.
make: *** [pdf] Error 1
Error in buildVignettes(dir = ".") : running make failed
Execution halted