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Package 104/208OSArchBUILDCHECKBUILD BIN

LPE

1.9.0

Nitin Jain
Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 10.1) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Windows Server 2003 x86_64 OK  OK  OK 
Windows Server 2003 NA[ ERROR ]skippedskipped
Mac OS X (10.4.6) i686 OK  OK 
Package: LPE
Version: 1.9.0
Command: E:\biocbld\2.0d\R\bin\R.exe CMD build LPE
RetCode: 1
Time: 27.5 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'LPE/DESCRIPTION' ... OK
* preparing 'LPE':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/2.0d/tmpdir/Rinst336860382


---------- Making package LPE ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'LPE'
     Formats: text html latex example chm 
  Ley                               text    html    latex           chm
  am.trans                          text    html    latex   example chm
  baseOlig.error                    text    html    latex   example chm
  baseOlig.error.step1              text    html    latex   example chm
  baseOlig.error.step2              text    html    latex   example chm
  fdr.adjust                        text    html    latex   example chm
  fixbounds.predict.smooth.spline   text    html    latex   example chm
  iqr                               text    html    latex   example chm
  lowess.normalize                  text    html    latex   example chm
  lpe                               text    html    latex   example chm
  mt.rawp2adjp                      text    html    latex   example chm
  n.genes.adaptive.int              text    html    latex   example chm
  permute                           text    html    latex   example chm
  preprocess                        text    html    latex   example chm
  quan.norm                         text    html    latex   example chm
  quartile.normalize                text    html    latex   example chm
  resamp.adj                        text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\2.0d\Rpacks\LPE\chm\LPE.chm





Compile time: 0 minutes, 0 seconds

18	Topics

46	Local links

2	Internet links

1	Graphic





Created e:\biocbld\2.0d\Rpacks\LPE\chm\LPE.chm, 41,480 bytes

Compression decreased file by 28,664 bytes.

  preparing package LPE for lazy loading
  adding MD5 sums

* DONE (LPE)
* creating vignettes ... ERROR
This is pdfeTeX, Version 3.141592-1.30.6-2.2 (MiKTeX 2.5)
entering extended mode
(LPE.tex
LaTeX2e <2005/12/01>
Babel  and hyphenation patterns for english, dumylang, nohyphenation, ge
rman, ngerman, french, loaded.
("C:\Program Files\MiKTeX 2.5\tex\latex\base\article.cls"
Document Class: article 2005/09/16 v1.4f Standard LaTeX document class
("C:\Program Files\MiKTeX 2.5\tex\latex\base\size12.clo"))
("C:\Program Files\MiKTeX 2.5\tex\latex\amsmath\amsmath.sty"
For additional information on amsmath, use the `?' option.
("C:\Program Files\MiKTeX 2.5\tex\latex\amsmath\amstext.sty"
("C:\Program Files\MiKTeX 2.5\tex\latex\amsmath\amsgen.sty"))
("C:\Program Files\MiKTeX 2.5\tex\latex\amsmath\amsbsy.sty")
("C:\Program Files\MiKTeX 2.5\tex\latex\amsmath\amsopn.sty"))
("C:\Program Files\MiKTeX 2.5\tex\latex\pstricks\pstricks.sty"
("C:\Program Files\MiKTeX 2.5\tex\generic\pstricks\pstricks.tex"
`PSTricks' v1.14c  <2006/04/29> (tvz)
("C:\Program Files\MiKTeX 2.5\tex\generic\pstricks\pstricks.con"))
("C:\Program Files\MiKTeX 2.5\tex\latex\xcolor\xcolor.sty"
("C:\Program Files\MiKTeX 2.5\tex\latex\00miktex\color.cfg")
("C:\Program Files\MiKTeX 2.5\tex\latex\graphics\pdftex.def")))
("C:\Program Files\MiKTeX 2.5\tex\latex\hyperref\hyperref.sty"
("C:\Program Files\MiKTeX 2.5\tex\latex\graphics\keyval.sty")
("C:\Program Files\MiKTeX 2.5\tex\latex\hyperref\pd1enc.def")
("C:\Program Files\MiKTeX 2.5\tex\latex\00miktex\hyperref.cfg")
("C:\Program Files\MiKTeX 2.5\tex\latex\oberdiek\kvoptions.sty")
Implicit mode ON; LaTeX internals redefined
("C:\Program Files\MiKTeX 2.5\tex\latex\ltxmisc\url.sty"))
*hyperref using default driver hpdftex*
("C:\Program Files\MiKTeX 2.5\tex\latex\hyperref\hpdftex.def")
("C:\Program Files\MiKTeX 2.5\tex\latex\natbib\natbib.sty") (isorot.sty
("C:\Program Files\MiKTeX 2.5\tex\latex\graphics\graphicx.sty"
("C:\Program Files\MiKTeX 2.5\tex\latex\graphics\graphics.sty"
("C:\Program Files\MiKTeX 2.5\tex\latex\graphics\trig.sty")
("C:\Program Files\MiKTeX 2.5\tex\latex\00miktex\graphics.cfg")))
("C:\Program Files\MiKTeX 2.5\tex\latex\graphics\lscape.sty"))
======================================================================
starting package maintenance...
installation directory: "C:\Program Files\MiKTeX 2.5"
package repository: ftp://ftp.cise.ufl.edu/pub/mirrors/tex-archive/systems/win32/miktex/tm/packages/
DBlight digest: 91cf918982171a72864dc4b6c898f013
going to download 357469 bytes
going to install 28 file(s) (1 package(s))
downloading ftp://ftp.cise.ufl.edu/pub/mirrors/tex-archive/systems/win32/miktex/tm/packages/preprint.cab...
357469 bytes, 62.24 KB/Sec
extracting files from preprint.cab...
pdflatex.exe: Windows API error 5: Access is denied.

make: *** [LPE.pdf] Error 1
buildVignettes(dir = '.')
Error in buildVignettes(dir = ".") : running make failed
Execution halted