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Package 87/208OSArchBUILDCHECKBUILD BIN

Harshlight

1.3.0

Maurizio Pellegrino
Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 10.1) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Windows Server 2003 x86_64 OK  OK  OK 
Windows Server 2003 NA OK [ ERROR ] OK 
Mac OS X (10.4.6) i686 OK  OK 
Package: Harshlight
Version: 1.3.0
Command: E:\biocbld\2.0d\R\bin\R.exe CMD check Harshlight_1.3.0.tar.gz
RetCode: 1
Time: 87.5 seconds
Status: ERROR
CheckDir: Harshlight.Rcheck
Warnings: NA

Command output

* checking for working latex ... OK
* using log directory 'E:/biocbld/2.0d/Rpacks/Harshlight.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'Harshlight/DESCRIPTION' ... OK
* this is package 'Harshlight' version '1.3.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Harshlight' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating Harshlight-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Harshlight-manual.tex ... OK
* checking Harshlight-manual.tex ... ERROR
LaTeX errors when creating DVI version.
This typically indicates Rd problems.

Harshlight.Rcheck/00install.out:

installing R.css in E:/biocbld/2.0d/Rpacks/Harshlight.Rcheck


---------- Making package Harshlight ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making Harshlight.d from Harshlight.c
gcc   -Ie:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c Harshlight.c -o Harshlight.o
windres --include-dir e:/biocbld/2.0d/R/include  -i Harshlight_res.rc -o Harshlight_res.o
gcc  -shared -s  -o Harshlight.dll Harshlight.def Harshlight.o Harshlight_res.o  -Le:/biocbld/2.0d/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'Harshlight'
     Formats: text html latex example chm 
  HarshComp                         text    html    latex           chm
  HarshExt                          text    html    latex           chm
  Harshlight                        text    html    latex   example chm
  sim                               text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\2.0d\Rpacks\Harshlight.Rcheck\00_pkg_src\Harshlight\chm\Harshlight.chm


Compile time: 0 minutes, 0 seconds
5	Topics
11	Local links
3	Internet links
1	Graphic


Created e:\biocbld\2.0d\Rpacks\Harshlight.Rcheck\00_pkg_src\Harshlight\chm\Harshlight.chm, 24,671 bytes
Compression decreased file by 1,612 bytes.
  preparing package Harshlight for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affyio
  adding MD5 sums

* DONE (Harshlight)