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Package 150/208OSArchBUILDCHECKBUILD BIN

ppiStats

1.1.1

Tony Chiang
Linux (SUSE 9.2) x86_64 OK  WARNINGS 
Linux (SUSE 10.1) x86_64 OK  WARNINGS 
Linux (SUSE 9.2) i686 OK  ERROR 
Solaris 2.9 sparc OK  ERROR 
Windows Server 2003 x86_64 OK [ ERROR ] OK 
Windows Server 2003 NA OK  ERROR  OK 
Mac OS X (10.4.6) i686 OK  WARNINGS 
Package: ppiStats
Version: 1.1.1
Command: D:\biocbld\2.0d\R\bin\R.exe CMD check ppiStats_1.1.1.tar.gz
RetCode: 1
Time: 75.2 seconds
Status: ERROR
CheckDir: ppiStats.Rcheck
Warnings: NA

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/2.0d/Rpacks/ppiStats.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'ppiStats/DESCRIPTION' ... OK
* this is package 'ppiStats' version '1.1.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiStats' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  makeBinVect twowayPERM
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ppiStats-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'ppiStats-Ex.R' failed.
The error most likely occurred in:

> ### * assessSymmetry
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: assessSymmetry
> ### Title: A function that calcualtes some directed degree statistics on
> ###   graphs using a binomial error model
> ### Aliases: assessSymmetry
> ### Keywords: datagen
> 
> ### ** Examples
> 
> library(ppiData)
Error in library(ppiData) : there is no package called 'ppiData'
Execution halted

ppiStats.Rcheck/00install.out:

installing R.css in D:/biocbld/2.0d/Rpacks/ppiStats.Rcheck


---------- Making package ppiStats ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'ppiStats'
     Formats: text html latex example chm 
  assessSymmetry                    text    html    latex   example chm
  bpMatrix                          text    html    latex   example chm
  calcInOutDegStats                 text    html    latex   example chm
  estErrProbMethodOfMoments         text    html    latex   example chm
  genBPGraph                        text    html    latex   example chm
  idProteinErrorType                text    html    latex   example chm
  idProteinType                     text    html    latex   example chm
  nullDistDoublyTestedEdges         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\2.0d\Rpacks\ppiStats.Rcheck\00_pkg_src\ppiStats\chm\ppiStats.chm


Compile time: 0 minutes, 0 seconds
9	Topics
18	Local links
2	Internet links
1	Graphic


Created d:\biocbld\2.0d\Rpacks\ppiStats.Rcheck\00_pkg_src\ppiStats\chm\ppiStats.chm, 28,419 bytes
Compression decreased file by 4,644 bytes.
  adding MD5 sums

* DONE (ppiStats)