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Package 57/208OSArchBUILDCHECKBUILD BIN

exprDB

0.3.0

Byron Ellis
Linux (SUSE 9.2) x86_64 OK  ERROR 
Linux (SUSE 10.1) x86_64 OK  ERROR 
Linux (SUSE 9.2) i686 OK  ERROR 
Solaris 2.9 sparc ERROR skipped
Windows Server 2003 x86_64[ ERROR ]skippedskipped
Windows Server 2003 NA ERROR skippedskipped
Mac OS X (10.4.6) i686 ERROR skipped
Package: exprDB
Version: 0.3.0
Command: D:\biocbld\2.0d\R\bin\R.exe CMD build exprDB
RetCode: 1
Time: 2.5 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'exprDB/DESCRIPTION' ... OK
* preparing 'exprDB':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/2.0d/tmpdir/Rinst578881008


---------- Making package exprDB ------------

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************

  adding build stamp to DESCRIPTION
  making DLL ...
making exprdb.d from exprdb.c
making exprdb_apply.d from exprdb_apply.c
making exprdb_r.d from exprdb_r.c
making exprdb_select.d from exprdb_select.c
making express.d from express.c
making r_col.d from r_col.c
gcc   -Id:/biocbld/2.0d/R/include  -Wall -O2 -std=gnu99   -c exprdb.c -o exprdb.o
In file included from common.h:6,
                 from exprdb.c:1:
express.h:4:16: db.h: No such file or directory
In file included from common.h:6,
                 from exprdb.c:1:
express.h:27: error: syntax error before "u_int32_t"
express.h:27: warning: no semicolon at end of struct or union
express.h:39: error: syntax error before "u_int32_t"
express.h:39: warning: no semicolon at end of struct or union
express.h:40: warning: type defaults to `int' in declaration of `cache_b'
express.h:40: warning: data definition has no type or storage class
express.h:41: error: syntax error before '*' token
express.h:41: warning: type defaults to `int' in declaration of `dbenv'
express.h:41: warning: data definition has no type or storage class
express.h:42: error: syntax error before '*' token
express.h:42: warning: type defaults to `int' in declaration of `dbp'
express.h:42: warning: data definition has no type or storage class
express.h:46: error: syntax error before '*' token
express.h:46: warning: type defaults to `int' in declaration of `meta'
express.h:46: warning: data definition has no type or storage class
express.h:47: error: syntax error before "k_max_genes"
express.h:47: warning: type defaults to `int' in declaration of `k_max_genes'
express.h:47: warning: type defaults to `int' in declaration of `k_max_arrays'
express.h:47: warning: data definition has no type or storage class
express.h:52: error: syntax error before "d_max_genes"
express.h:52: warning: type defaults to `int' in declaration of `d_max_genes'
express.h:52: warning: type defaults to `int' in declaration of `d_max_arrays'
express.h:52: warning: data definition has no type or storage class
express.h:120: error: syntax error before "u_int32_t"
express.h:163: error: syntax error before '}' token
express.h:167: error: syntax error before "DBT"
express.h:167: warning: no semicolon at end of struct or union
express.h:169: error: syntax error before '*' token
express.h:169: warning: type defaults to `int' in declaration of `c'
express.h:169: warning: data definition has no type or storage class
express.h:170: error: conflicting types for 'get'
express.h:151: error: previous declaration of 'get' was here
express.h:171: error: conflicting types for 'close'
express.h:110: error: previous declaration of 'close' was here
express.h:172: error: syntax error before '}' token
express.h:174: error: syntax error before "DB_ENV"
In file included from common.h:7,
                 from exprdb.c:1:
r_col.h:8: error: syntax error before "DB"
r_col.h:8: warning: no semicolon at end of struct or union
r_col.h:9: warning: type defaults to `int' in declaration of `ndx'
r_col.h:9: warning: data definition has no type or storage class
r_col.h:10: error: syntax error before '}' token
r_col.h:10: warning: type defaults to `int' in declaration of `R_COL'
r_col.h:10: warning: data definition has no type or storage class
r_col.h:12: error: syntax error before '*' token
r_col.h:12: warning: type defaults to `int' in declaration of `rcol_assoc'
r_col.h:12: warning: data definition has no type or storage class
r_col.h:13: error: syntax error before '*' token
exprdb.c: In function `EDB_dims':
exprdb.c:18: error: dereferencing pointer to incomplete type
exprdb.c:19: error: dereferencing pointer to incomplete type
exprdb.c: In function `EDB_finalize':
exprdb.c:37: error: dereferencing pointer to incomplete type
exprdb.c: In function `EDB_create':
exprdb.c:46: error: dereferencing pointer to incomplete type
exprdb.c:47: error: dereferencing pointer to incomplete type
exprdb.c: At top level:
express.h:168: error: storage size of `key' isn't known
make[3]: *** [exprdb.o] Error 1
make[2]: *** [srcDynlib] Error 2
make[1]: *** [all] Error 2
make: *** [pkg-exprDB] Error 2
*** Installation of exprDB failed ***

Removing 'D:/biocbld/2.0d/tmpdir/Rinst578881008/exprDB'
 ERROR
Installation failed.
Removing 'D:/biocbld/2.0d/tmpdir/Rinst578881008'