CHECK report for SAGElyzer on lemming

* checking for working latex ... OK * using log directory 'D:/biocbld/2.0d/Rpacks/SAGElyzer.Rcheck' * using R version 2.5.0 Under development (unstable) (2006-12-05 r40126) * checking for file 'SAGElyzer/DESCRIPTION' ... OK * this is package 'SAGElyzer' version '1.13.0' * checking package dependencies ... WARNING 'library' or 'require' calls not declared from: RODBC Rdbi RdbiPgSQL Biobase See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking if this is a source package ... OK * checking whether package 'SAGElyzer' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... ERROR Loading required package: AnnBuilder Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()' or start with 'help(Biobase)'. For details on reading vignettes, see the openVignette help page. Loading required package: XML Loading required package: annotate Loading required package: tkWidgets Loading required package: widgetTools Loading Tcl/Tk interface ... done Loading required package: DynDoc Loading required package: genefilter Loading required package: survival Loading required package: splines Loading required package: RODBC Error in fun(...) : package RODBC unavailable In addition: Warning message: there is no package called 'RODBC' in: library(package, lib.loc = lib.loc, character.only = TRUE, logical = TRUE, Error: .onLoad failed in 'loadNamespace' for 'SAGElyzer' Error: package/namespace load failed for 'SAGElyzer' Execution halted It looks like this package has a loading problem: see the messages for details.

installing R.css in D:/biocbld/2.0d/Rpacks/SAGElyzer.Rcheck ---------- Making package SAGElyzer ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata installing R files installing exec files installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'SAGElyzer' Formats: text html latex example chm SAGELyzer text html latex example chm SAGEMapper text html latex example chm SAGEToolTips text html latex example chm SAGEWidget text html latex example chm con4Win text html latex example chm getGEOSAGE text html latex example chm getNormFactor text html latex example chm getTargetRow text html latex example chm mergeSAGE text html latex example chm mergeSAGEWidget text html latex example chm querySAGE text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\2.0d\Rpacks\SAGElyzer.Rcheck\00_pkg_src\SAGElyzer\chm\SAGElyzer.chm Compile time: 0 minutes, 0 seconds 12 Topics 120 Local links 4 Internet links 1 Graphic Created d:\biocbld\2.0d\Rpacks\SAGElyzer.Rcheck\00_pkg_src\SAGElyzer\chm\SAGElyzer.chm, 37,114 bytes Compression decreased file by 28,367 bytes. preparing package SAGElyzer for lazy loading Loading required package: AnnBuilder Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()' or start with 'help(Biobase)'. For details on reading vignettes, see the openVignette help page. Loading required package: XML Loading required package: annotate Loading required package: tkWidgets Loading required package: widgetTools Loading required package: DynDoc Loading required package: genefilter Loading required package: survival Loading required package: splines adding MD5 sums * DONE (SAGElyzer)

Package 177/208	OS	Arch	BUILD	CHECK	BUILD BIN
SAGElyzer 1.13.0 Jianhua Zhang	Linux (SUSE 9.2)	x86_64	OK	WARNINGS
	Linux (SUSE 10.1)	x86_64	OK	WARNINGS
	Linux (SUSE 9.2)	i686	OK	WARNINGS
	Solaris 2.9	sparc	OK	WARNINGS
	Windows Server 2003	x86_64	OK	[ ERROR ]	OK
	Windows Server 2003	NA	OK	ERROR	OK
	Mac OS X (10.4.6)	i686	OK	ERROR

SAGElyzer

1.13.0

Command output